Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   F6X58_RS06860 Genome accession   NZ_CP044262
Coordinates   1333646..1334566 (-) Length   306 a.a.
NCBI ID   WP_139453565.1    Uniprot ID   -
Organism   Campylobacter armoricus strain CA639     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1328646..1339566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X58_RS06835 cysK 1329608..1330510 (-) 903 WP_139425646.1 cysteine synthase A -
  F6X58_RS06840 - 1330605..1330907 (-) 303 WP_139425644.1 HU family DNA-binding protein -
  F6X58_RS06845 - 1331001..1331282 (-) 282 WP_139425642.1 hypothetical protein -
  F6X58_RS06850 - 1331295..1331915 (-) 621 WP_139453567.1 hypothetical protein -
  F6X58_RS08855 - 1331978..1332127 (-) 150 WP_161593833.1 hypothetical protein -
  F6X58_RS06855 - 1332136..1333645 (-) 1510 Protein_1302 MBOAT family O-acyltransferase -
  F6X58_RS06860 waaF 1333646..1334566 (-) 921 WP_139453565.1 lipopolysaccharide heptosyltransferase II Regulator
  F6X58_RS06865 - 1334625..1335449 (+) 825 WP_139451907.1 glycosyltransferase family 2 protein -
  F6X58_RS06870 - 1335441..1336292 (-) 852 WP_139451906.1 alpha-2,3-sialyltransferase -
  F6X58_RS06875 - 1336355..1338019 (-) 1665 WP_201739491.1 motility associated factor glycosyltransferase family protein -
  F6X58_RS08860 - 1338121..1338282 (-) 162 WP_161593832.1 hypothetical protein -
  F6X58_RS06880 - 1338282..1339046 (-) 765 WP_139453562.1 oxidoreductase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34877.12 Da        Isoelectric Point: 10.2969

>NTDB_id=389157 F6X58_RS06860 WP_139453565.1 1333646..1334566(-) (waaF) [Campylobacter armoricus strain CA639]
MNIFINLPTWLGDAVMASSAIYAIKEKYPKAKFTFYGSFVSTELFKRFENTQILVEHKKQRYKQILKARKSFGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFEKNILKEEHQVLKYLNFIEKALNFKASSNALKLPIKEKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEHFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPELVINLAKNLLGV

Nucleotide


Download         Length: 921 bp        

>NTDB_id=389157 F6X58_RS06860 WP_139453565.1 1333646..1334566(-) (waaF) [Campylobacter armoricus strain CA639]
ATGAATATTTTTATCAATCTTCCTACATGGCTTGGTGATGCGGTGATGGCTAGTTCGGCTATTTATGCTATCAAAGAAAA
ATATCCTAAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAGCGTTTTGAAAATACTCAAATTT
TAGTAGAACATAAAAAGCAAAGATACAAACAAATTTTAAAAGCCAGAAAAAGCTTTGGCAAATTTGATTTAGCTTTTTCA
TTTCGTTCAGCATTTTCAAGTAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGAAAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCCAGTTCAAATGCTTTAA
AACTTCCTATAAAAGAAAAATCAACTCAAAAAATTTTAGGTATAAATCCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCAAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACACACCAAATTTTAATCTTTGGAGTAGAGAGTGAGAG
AGAAATTTGTGATGAAATTGAGCATTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTGAAAACAGTGGCTGTTTTTGGCTCGACTAAATTCAGTCAAACATCACCTTGGCAAGAAAATGCTAAAATAGCTCA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTTTGTCCTTTAAAACACCATAAATGTATGAAAGATTTAAAACCTG
AATTAGTGATAAATCTAGCAAAAAATCTTTTAGGAGTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.287

100

0.67

Multiple sequence alignment