Detailed information NTG0389147

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: F6X58_RS02355
• Genome accession: NZ_CP044262
• Coordinates: 403476..404867 (+)
• Length: 463 a.a.
• NCBI ID: WP_139453871.1
• Uniprot ID: -
• Organism: Campylobacter armoricus strain CA639
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 398476..409867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F6X58_RS02340	-	398861..399505 (+)	645	WP_139453869.1	HAD family hydrolase	-
F6X58_RS02345	nifJ	399623..403177 (+)	3555	WP_139453870.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
F6X58_RS02350	-	403181..403504 (+)	324	WP_139451668.1	hypothetical protein	-
F6X58_RS02355	ctsD	403476..404867 (+)	1392	WP_139453871.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
F6X58_RS02360	-	404848..405186 (+)	339	WP_139424574.1	CDC27 family protein	-
F6X58_RS02365	-	405155..406729 (+)	1575	WP_161593838.1	GspE/PulE family protein	-
F6X58_RS02370	-	406726..407892 (+)	1167	WP_139451671.1	type II secretion system F family protein	-
F6X58_RS02375	-	407882..408064 (-)	183	WP_039666669.1	hypothetical protein	-
F6X58_RS02380	-	408189..409100 (+)	912	WP_139424579.1	acyltransferase	-
F6X58_RS09140	-	409184..409417 (+)	234	WP_139493258.1	hypothetical protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52648.48 Da
• Isoelectric Point: 7.0575

>NTDB_id=389147 F6X58_RS02355 WP_139453871.1 403476..404867(+) (ctsD) [Campylobacter armoricus strain CA639]
MIKIIFLFISIFTFASASINQCNQRVFDISIEDKTSLLEILNELGRECSYSIIIKDLVAKEKLDNMQNYLHIKKMTLREI
FNLLLKENNLSYEFEKNILKIYGKKVKTFKIHYISSIREGQSITKASVDSRPRQGDYDNAKEADNLVISTDRFDFWEKIS
EEIQALLDENTSKPIINTNAGIITLNATPYELARVEKYLYDLNNRLKKQVLIDVSIVAVHLNKSHSSGINWQELAIKLNG
DDNDFIINKGGIRNINLKANIETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
FNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNYRQNKPRNIAPDTIQKKLSTVVEIDDGQTLILGGLISKN
TITNNNEISALSKIPLFGFLFQGKQNLQDSSEIVFIIKPKLIKEDRKILSLKELGFEHEDGMF

Nucleotide

• Length: 1392 bp

>NTDB_id=389147 F6X58_RS02355 WP_139453871.1 403476..404867(+) (ctsD) [Campylobacter armoricus strain CA639]
ATGATAAAAATAATATTCTTATTTATTAGTATTTTTACTTTTGCTAGTGCATCTATAAATCAATGCAATCAGCGAGTATT
CGATATAAGTATAGAAGATAAAACTTCTTTACTTGAAATTTTAAATGAACTTGGTAGAGAATGTAGTTATAGTATTATTA
TAAAAGATTTGGTGGCTAAAGAAAAACTTGATAATATGCAAAATTATTTACATATAAAAAAAATGACTTTAAGAGAAATT
TTTAATTTGTTATTGAAAGAAAATAATCTTTCTTATGAATTTGAGAAAAATATTTTAAAAATTTATGGAAAAAAAGTAAA
AACTTTTAAAATTCATTATATTAGTTCTATTAGAGAAGGGCAAAGCATCACAAAAGCTTCAGTAGATTCAAGACCTAGAC
AAGGTGATTATGATAATGCTAAAGAAGCAGATAACTTAGTAATAAGCACAGATAGATTTGATTTTTGGGAAAAAATATCT
GAAGAAATTCAAGCTTTATTGGATGAGAATACATCAAAACCTATTATTAACACTAACGCAGGGATTATAACTTTAAATGC
AACACCATACGAGCTTGCAAGAGTTGAAAAATATTTATATGATTTGAATAATAGGCTTAAAAAGCAGGTGTTAATTGATG
TAAGTATAGTTGCAGTGCATTTAAATAAAAGTCATTCTAGTGGGATTAATTGGCAAGAACTTGCTATTAAATTAAATGGT
GATGATAATGATTTTATTATTAACAAAGGTGGAATTAGAAATATAAATTTAAAGGCTAATATAGAAACAAAGGCTATTTT
AAATTTATTACAGGAAAATGGAAAAACAACAGTGCTTTCTAATCCTAAATTAATGGCTTTAAATAATCAACAAGCTATTA
TTTCTATAGGAGATACTATAAATTATCAAGTAAAAGAAAGCTCTAAAGGTACTGAAAATGGAACAACTATTAGCGAAACT
TTTAATAATTATTCTATATTTGTAGGAATTTTGCTTAATATTTTACCAGAAATTTCAGATGATCATAAGATTATGCTTAG
GATAAATCCAAGTTTAAGTGATTTTAAATATAGTGTTGATAATTATCGTCAAAATAAACCTAGAAATATAGCTCCTGACA
CTATACAAAAAAAGCTTTCGACGGTGGTTGAGATTGATGATGGCCAGACTTTAATTTTAGGAGGATTGATTAGTAAAAAT
ACTATTACTAATAATAATGAAATTAGTGCTTTATCTAAAATACCACTTTTTGGATTTTTATTTCAAGGTAAACAAAATTT
ACAAGATAGTAGTGAAATTGTTTTTATTATTAAACCCAAACTAATTAAAGAAGATAGAAAAATTTTAAGTTTAAAAGAAT
TAGGTTTTGAACATGAAGATGGTATGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

• Secretin and TonB N terminus short domain (STN) (66-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	57.717	100	0.59