Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   F6X58_RS01975 Genome accession   NZ_CP044262
Coordinates   318584..319762 (+) Length   392 a.a.
NCBI ID   WP_139453832.1    Uniprot ID   -
Organism   Campylobacter armoricus strain CA639     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 313584..324762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X58_RS01960 cysC 314371..314955 (+) 585 WP_139424429.1 adenylyl-sulfate kinase -
  F6X58_RS08925 - 314952..316526 (+) 1575 WP_167507487.1 hypothetical protein -
  F6X58_RS01970 - 316560..318587 (+) 2028 WP_139424431.1 capsular polysaccharide biosynthesis protein -
  F6X58_RS01975 kpsS 318584..319762 (+) 1179 WP_139453832.1 capsule biosynthesis protein Regulator
  F6X58_RS09020 - 319759..321285 (-) 1527 WP_201273997.1 SGNH/GDSL hydrolase family protein -
  F6X58_RS01985 - 321450..322586 (+) 1137 WP_139453833.1 DUF829 domain-containing protein -
  F6X58_RS01990 - 322596..323969 (+) 1374 WP_139453834.1 cytochrome P450 -
  F6X58_RS01995 - 323966..324319 (+) 354 WP_139453835.1 succinylglutamate desuccinylase -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46531.26 Da        Isoelectric Point: 10.2548

>NTDB_id=389146 F6X58_RS01975 WP_139453832.1 318584..319762(+) (kpsS) [Campylobacter armoricus strain CA639]
MNLSKKLKKFSGKNVLLLQGPVGSFFRKIATKIPKAKVYKVNFNGGDFFFYPFKSINYTKSLAKLEDFYKKLFEEKQIQV
VLMYNDCRKVHEIAINVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFVKDFKFKTFSNTFRNM
AFASFLYWFFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKSIEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDIVLHTKFRNYVIYKTQINGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=389146 F6X58_RS01975 WP_139453832.1 318584..319762(+) (kpsS) [Campylobacter armoricus strain CA639]
ATGAATTTAAGTAAAAAGTTAAAAAAATTTTCTGGTAAAAATGTTTTATTGCTCCAAGGACCTGTGGGAAGTTTTTTTCG
TAAAATTGCTACAAAAATCCCAAAAGCTAAGGTTTATAAAGTAAATTTTAATGGCGGAGATTTTTTCTTTTATCCTTTTA
AAAGCATTAATTACACTAAAAGTTTAGCTAAACTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAACAAATTCAAGTT
GTCTTGATGTATAATGATTGTAGAAAAGTTCATGAGATAGCCATTAATGTAGCTAAGCAAATGGGTATTGAGGTATGGAT
TTTTGAAGAAGGTTATATAAGACCAAATTTCATTACTTTTGAAAAAGATGGAGTGAATGCAAACTCGACCCTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGTCAAAGATTTTAAATTTAAAACTTTTTCAAACACTTTTAGAAATATG
GCTTTTGCTTCATTTTTATACTGGTTTTTTGCTTTTTTATTTTCCTGGTATTTTAATAATTCCTTACACCATAGAAGTTT
AAAACTATTTGACTTTTTGCCTTGGCTTTGTTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAATG
AAAAAATTCTTTCGTTAAAACAAAAGTATTTTTTAGCTATCTTGCAAGTGCATAATGATACACAACTTTCGCATCATTAT
AAAAAAAGCATAGAAAAATTTATAGAAGAAGTGATTATTTCTTTTGCTAATCATGCTAAAGCAAAGTCTTATTTAGTTTT
TAAGCATCATCCTATGGATCGTGGCTATAGGGATTATACTAAGCTTATAGAAGATTTGAGTTTAAAATACAATGTTGAAG
GTAGAATTTTATATGTGCATGATTTGCATTTGCCCACGCTTTTGATTAATGCAAGAGGCACAATAGTCATAAATAGCACA
GTAGGTCTTTCTGCTTTATATCACAATAGTCCTTTAAAAGTTATGGGAAAAGCATTTTATGATATAGAAGGCTTAACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGTAGAGCATATAAACCTGACATAGTTTTACATACTAAATTTAGAAATT
ATGTGATATATAAAACTCAAATCAATGGAAATTTTTTTAAAAATACTAGTTTAGACTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.879

100

0.635

Multiple sequence alignment