Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPB220_RS09860 Genome accession   NZ_CP044230
Coordinates   1944741..1946102 (-) Length   453 a.a.
NCBI ID   WP_150906643.1    Uniprot ID   A0A5J6LQD2
Organism   Streptococcus sp. LPB0220     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1939741..1951102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB220_RS10880 - 1941794..1943590 (+) 1797 WP_225305916.1 mucin-binding protein -
  LPB220_RS09855 (LPB220_09860) - 1943963..1944457 (-) 495 WP_003008959.1 beta-class carbonic anhydrase -
  LPB220_RS09860 (LPB220_09865) radA 1944741..1946102 (-) 1362 WP_150906643.1 DNA repair protein RadA Machinery gene
  LPB220_RS09865 (LPB220_09870) - 1946113..1946628 (-) 516 WP_150906644.1 histidine phosphatase family protein -
  LPB220_RS09870 (LPB220_09875) - 1946653..1946853 (-) 201 Protein_1833 isochorismatase family protein -
  LPB220_RS10945 (LPB220_09880) - 1946831..1946982 (-) 152 Protein_1834 hypothetical protein -
  LPB220_RS09880 (LPB220_09885) - 1947020..1947559 (-) 540 WP_049475022.1 histidine phosphatase family protein -
  LPB220_RS09885 (LPB220_09890) - 1947561..1948007 (-) 447 WP_191904636.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49362.81 Da        Isoelectric Point: 6.3731

>NTDB_id=389010 LPB220_RS09860 WP_150906643.1 1944741..1946102(-) (radA) [Streptococcus sp. LPB0220]
MIAKKKTTFICQNCAYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYISGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEV
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRVGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEV
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGISTPSGIEVVGVSTLSEVLKKVF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=389010 LPB220_RS09860 WP_150906643.1 1944741..1946102(-) (radA) [Streptococcus sp. LPB0220]
ATCATCGCAAAGAAAAAAACGACATTTATTTGTCAAAATTGTGCCTATAATTCACCCAAATACCTAGGGCGCTGTCCTAA
CTGTGGATCTTGGTCTTCCTTTGTGGAGGAAGTCGAAGTTGCAGAGGTCAAGAATGCCCGGGTATCCTTGACAGGTGAAA
AGACCAAACCCATGAAATTGGCGGATGTGACCTCCATCAATGTCCATCGTACCAAGACCGAGATGGAAGAATTCAACCGC
GTCCTTGGTGGAGGAGTGGTCCCAGGGAGTCTCGTTCTCATCGGTGGTGATCCTGGGATTGGGAAATCAACCCTGCTCCT
TCAAGTATCGACCCAACTGTCTCAAGTGGGAACGGTTCTCTATATCAGTGGAGAGGAGTCGGCCCAGCAGATCAAACTCC
GTGCAGAGCGATTGGGAGATATCGATAGCGAGTTTTACCTCTATGCCGAGACCAATATGCAGAGCGTGCGAGCAGAGGTA
GAGCGGATCCAACCTGACTTTCTTATCATCGACTCCATTCAGACCATTATGTCTCCTGAGATTTCAGGGGTCCAGGGATC
GGTTTCTCAGGTGCGGGAAGTGACGGCAGAGCTCATGCAGTTGGCCAAAACCAATAACATCGCCATCTTCATCGTCGGGC
ACGTAACAAAGGAAGGAACCTTGGCAGGTCCTCGGATGCTGGAACATATGGTGGATACGGTCCTCTACTTTGAGGGCGAA
CGCCACCATACCTTCCGGATTCTGAGAGCGGTCAAGAACCGCTTTGGCTCGACCAATGAGATCGGTATCTTCGAAATGCA
ATCAGGTGGCTTGGTCGAGGTTCTCAATCCTAGTCAGGTCTTTCTGGAAGAGCGCCTGGATGGCGCGACTGGCTCGTCCA
TCGTGGTCACCATGGAAGGGACGCGTCCAATTCTAGCTGAAGTGCAGGCCTTGGTGACGCCAACTATGTTTGGAAATGCC
AAGCGGACGACAACGGGGCTTGATTTCAATCGGGCCAGTCTCATCATGGCAGTGCTAGAAAAACGAGTGGGTTTGCTCCT
TCAAAATCAGGATGCCTACCTCAAGTCTGCAGGTGGTGTCAAGTTGGATGAGCCAGCTATCGACCTAGCCGTAGCCGTAG
CCATTGCCTCGAGCTACAAGGACAAGCCAACCAACCCGCAGGAATGTTTCGTTGGAGAGTTGGGCTTGACAGGAGAAGTT
CGCCGGGTCAACCGGATCGAACAACGGATCAATGAAGCTGCCAAGCTCGGTTTTACCAAGATTTATGTTCCGAAAAACTC
TCTGACGGGGATTTCGACACCATCAGGGATCGAAGTGGTCGGTGTGAGTACACTGTCTGAAGTCTTGAAGAAAGTATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LQD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

96.018

99.779

0.958
  radA Streptococcus pneumoniae D39

96.018

99.779

0.958
  radA Streptococcus pneumoniae R6

96.018

99.779

0.958
  radA Streptococcus pneumoniae TIGR4

96.018

99.779

0.958
  radA Streptococcus mitis SK321

96.018

99.779

0.958
  radA Streptococcus mitis NCTC 12261

95.796

99.779

0.956
  radA Bacillus subtilis subsp. subtilis str. 168

63.355

100

0.634

Multiple sequence alignment