Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   F5976_RS06215 Genome accession   NZ_CP044228
Coordinates   1175943..1177742 (+) Length   599 a.a.
NCBI ID   WP_005685361.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain hsryfm 1301     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1170943..1182742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5976_RS06200 (F5976_06200) - 1171899..1172579 (+) 681 WP_005685365.1 hypothetical protein -
  F5976_RS06205 (F5976_06205) brnQ 1173232..1174611 (+) 1380 WP_005685364.1 branched-chain amino acid transport system II carrier protein -
  F5976_RS06210 (F5976_06210) - 1174720..1175814 (-) 1095 WP_005685362.1 LCP family protein -
  F5976_RS06215 (F5976_06215) pepF 1175943..1177742 (+) 1800 WP_005685361.1 oligoendopeptidase F Regulator
  F5976_RS06220 (F5976_06220) - 1177739..1178620 (+) 882 WP_014568999.1 NAD(P)-dependent oxidoreductase -
  F5976_RS06225 (F5976_06225) - 1178617..1179465 (+) 849 WP_005685359.1 metallophosphoesterase -
  F5976_RS06230 (F5976_06230) - 1179578..1180375 (-) 798 WP_005685358.1 metal ABC transporter permease -
  F5976_RS06235 (F5976_06235) - 1180372..1181091 (-) 720 WP_005685357.1 metal ABC transporter ATP-binding protein -
  F5976_RS06240 (F5976_06240) - 1181256..1181600 (-) 345 WP_005685356.1 hypothetical protein -
  F5976_RS06245 (F5976_06245) - 1181702..1182733 (-) 1032 WP_005685355.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67181.10 Da        Isoelectric Point: 5.4276

>NTDB_id=388932 F5976_RS06215 WP_005685361.1 1175943..1177742(+) (pepF) [Lacticaseibacillus rhamnosus strain hsryfm 1301]
MQHLPAREDVPTQLTWDLTTIYPDDSAWETDFKAVRAQAKAAVALKGTLGNSADALVTGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAELASQLAFLDPEILAIPSDKLTAWRDTESLKPFGHFIDAITVNREHVLTTAAEALIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKEAFEALLRAYESLKNTFAQTLSGQVKA
HNFNATAHHYKNARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLAVDQLHMYDIYTPLTGQPPLTYTLEQA
KAEALKALAPLGDDYLEHVREIFDNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHSDDPKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTA
TSMSQYYADLNARYYGPEVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPDAAAHYLDYLKSGSSKY
AIDTMKTAGVDMTKPDYLEAAFSVFEQRLTELEKILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=388932 F5976_RS06215 WP_005685361.1 1175943..1177742(+) (pepF) [Lacticaseibacillus rhamnosus strain hsryfm 1301]
ATGCAACATTTACCAGCACGAGAGGATGTCCCAACGCAATTGACCTGGGACCTGACAACGATTTATCCAGATGATTCAGC
TTGGGAAACCGACTTTAAAGCTGTCCGTGCCCAAGCCAAAGCGGCCGTCGCATTGAAAGGAACGTTAGGCAACTCGGCAG
ACGCCCTTGTTACCGGCATTAAAGCCGTACTTGCAGTTTTTCGACGCTTCGAGAAGGTTTACGTCTATTCAAGTTTAAAA
AGCGATCAAGATACCGGTAACGCCACTTATCAGGCGATGAATGCCAAAGCTGAAAGCCTGGGTGCTGAATTAGCCAGTCA
GTTAGCGTTTTTGGATCCGGAAATTCTGGCGATCCCAAGCGACAAATTAACGGCCTGGCGTGACACTGAAAGCTTGAAGC
CATTCGGACATTTTATTGATGCCATCACGGTAAATCGAGAACACGTCTTGACAACCGCTGCCGAGGCCTTGATTGCAAGT
GCGGGCGATGCCTTAAATGCCAGTCACGCGACCTTCAATGTATTAAACAACTCTGATCTGCAATTCGGGTTTGTTGAAAA
TGAAGATGGCGAAACCGTCCAGCTTAGTAACGGTTTGTACGGTCAGTTGATTCGCTCGACTAACCGTAAATTACGCAAGG
AGGCTTTCGAGGCCCTTCTGCGTGCTTACGAAAGTTTAAAAAATACGTTTGCGCAAACGTTAAGTGGTCAAGTGAAAGCC
CATAATTTCAACGCGACAGCGCATCATTACAAAAATGCGCGTGCTGCCGCTATGGCAAGTAATCACATTCCGGAAAGTGT
GTACACGACGCTTATCGACCAGGTTAACACCCACCTGCCGCTTTTACATCGTTATGTCGCCTTGCGTAAAAAGGTGTTGG
CAGTCGATCAGTTACACATGTATGACATTTACACACCACTGACTGGCCAGCCGCCGTTGACTTATACGCTTGAACAAGCC
AAAGCAGAGGCCTTAAAAGCTTTAGCCCCACTAGGCGATGATTATCTTGAGCATGTTCGCGAAATTTTTGACAATCGCTA
TATTGATGTTGTCGAAAATAAAGGCAAACGTTCAGGTGCCTATTCCGGTGGTGCTTATGATACCAATCCGTTCATCTTAT
TGAACTGGCACGATGCCGTTGATGAACTCTATACGTTGGTTCACGAAACCGGCCACAGCGTCCACAGTTGGTACACGCGT
CACAATCAGCCGTATGTCTATGGTGATTATCCGATCTTTGTTGCCGAAATTGCTTCAACAACCAACGAAAACCTGTTAAC
TGATTATTTCCTGACACATTCGGATGATCCCAAAGTACGAGCCTACATTTTGAATTACTATCTCGATGGTTTTAAAGGAA
CTGTTTTCCGTCAGACACAATTTGCCGAGTTCGAGCACTGGATTCACCAACAGGATCAGCAAGGCGAACCGTTGACGGCC
ACCAGCATGTCACAATATTACGCCGATCTCAACGCCCGGTATTATGGACCGGAAGTTGCACGCGATCCGGAAATTGCCTT
TGAATGGGCCCGCATTCCGCACTTCTATTACAATTACTATGTTTACCAGTATGCAACCGGCTTTGCTGCTGCCTCAACCT
TAGCAGCGGGCATCAGTAGCGGTGAACCTGACGCGGCTGCCCATTACTTAGACTATTTGAAGTCAGGGAGTTCTAAGTAT
GCCATTGACACCATGAAAACAGCTGGCGTTGATATGACCAAACCCGATTATCTTGAAGCCGCCTTTTCAGTATTTGAACA
GCGCTTGACGGAATTGGAAAAAATCTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.941

99.332

0.526

Multiple sequence alignment