Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F3I61_RS07560 Genome accession   NZ_CP044227
Coordinates   1604865..1606235 (+) Length   456 a.a.
NCBI ID   WP_151075892.1    Uniprot ID   -
Organism   Flintibacter sp. KGMB00164     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1599865..1611235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3I61_RS07540 yunB 1599914..1600594 (+) 681 WP_008980820.1 sporulation protein YunB -
  F3I61_RS07545 ligA 1600611..1602584 (+) 1974 WP_008980821.1 NAD-dependent DNA ligase LigA -
  F3I61_RS07550 - 1602649..1603602 (+) 954 WP_008980822.1 DMT family transporter -
  F3I61_RS07555 - 1603636..1604766 (+) 1131 WP_151075891.1 DUF362 domain-containing protein -
  F3I61_RS07560 radA 1604865..1606235 (+) 1371 WP_151075892.1 DNA repair protein RadA Machinery gene
  F3I61_RS07565 - 1606592..1607620 (+) 1029 WP_151075893.1 tyrosine-type recombinase/integrase -
  F3I61_RS07570 - 1607686..1608354 (-) 669 WP_151075894.1 hypothetical protein -
  F3I61_RS07575 - 1608347..1608688 (-) 342 WP_151075895.1 PadR family transcriptional regulator -
  F3I61_RS07580 tnpA 1608906..1609382 (-) 477 WP_151075357.1 IS200/IS605 family transposase -
  F3I61_RS07585 - 1609574..1610878 (-) 1305 WP_151075896.1 Na+/H+ antiporter NhaC family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48625.46 Da        Isoelectric Point: 6.6257

>NTDB_id=388916 F3I61_RS07560 WP_151075892.1 1604865..1606235(+) (radA) [Flintibacter sp. KGMB00164]
MKEKILYYCTECGNETPKWQGKCPACGAWNTIVERPAEKSSKKGPVRSVGSGLGVAVNRPKPIAQVETTDELRFPTGMGE
LDRVLGGGAVKGSLVLVGGAPGIGKSTLMLQICGSLCRFANVLYVSGEESERQIKLRAERLKVGGEGLYLLSETSLDNLV
DAVHELKPDILIVDSIQTLYHGDLSASPGSVSQVKECTMALMQLAKGEGLTIFVIGHVNKEGSIAGPKVLEHMVDCVLYF
EGERHMSYRILRAAKNRFGATNEIGVFEMEDGGLSEVPNPSETLLAGRPEGVPGSCVTCVMEGVRPVLAEVQALVVPSSL
GNPRRVSNGFEYNRAMLLLAVLEKRGGLLLGGCDAYLNVIGGLSLDEPAADLAAMMAMASSFRDKPVPSDLAAIGEVGLT
GELRAVNTLGQRLSEVRRLGFTKCLIPKRTQGKLVVPEGLELIRVANIREALAALL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=388916 F3I61_RS07560 WP_151075892.1 1604865..1606235(+) (radA) [Flintibacter sp. KGMB00164]
ATGAAAGAGAAGATCCTGTACTACTGTACCGAATGTGGAAATGAGACCCCCAAGTGGCAGGGCAAGTGCCCGGCCTGCGG
GGCTTGGAATACGATTGTGGAGCGCCCGGCGGAGAAGTCCTCCAAAAAGGGACCGGTGCGCTCAGTGGGCAGCGGCCTGG
GGGTGGCGGTGAACCGCCCCAAGCCCATCGCCCAGGTGGAGACCACCGATGAGCTGCGCTTTCCCACCGGAATGGGAGAG
CTGGACCGGGTGCTGGGCGGGGGAGCCGTGAAGGGTTCCCTGGTCCTGGTGGGCGGCGCGCCGGGCATCGGCAAGTCCAC
CCTGATGCTCCAGATCTGCGGCTCTCTGTGCCGGTTTGCCAACGTGTTGTACGTCTCCGGTGAGGAATCCGAGCGGCAGA
TCAAGCTGCGGGCCGAACGGCTCAAAGTAGGCGGGGAGGGGCTGTACCTCCTGTCGGAAACCAGCCTGGACAACCTGGTG
GATGCCGTACACGAATTAAAGCCCGATATTCTGATTGTCGACTCCATCCAGACCCTCTACCACGGGGACCTGTCCGCTTC
GCCGGGCAGCGTGAGCCAGGTGAAAGAGTGCACCATGGCCCTGATGCAGCTGGCAAAAGGGGAGGGGCTCACCATTTTTG
TCATTGGCCACGTGAATAAGGAGGGCTCCATCGCCGGACCTAAGGTGCTGGAGCACATGGTGGACTGTGTGCTCTACTTT
GAGGGCGAGCGGCACATGTCCTACCGCATCCTCCGGGCGGCCAAAAACCGCTTCGGCGCCACCAATGAAATTGGTGTGTT
TGAAATGGAGGACGGCGGGCTCAGCGAGGTGCCCAATCCCTCGGAAACCCTGCTGGCCGGACGTCCGGAGGGCGTGCCCG
GTTCCTGCGTCACCTGTGTGATGGAGGGCGTTCGTCCGGTATTGGCCGAGGTACAGGCCCTGGTCGTGCCCAGCAGCCTG
GGTAACCCCCGGCGGGTGAGCAATGGCTTTGAGTATAACCGGGCCATGCTGCTGCTGGCCGTGCTGGAGAAACGGGGCGG
CCTGCTGCTGGGAGGCTGCGACGCCTATTTGAACGTGATCGGCGGCCTGTCGTTGGACGAGCCTGCCGCCGACCTTGCCG
CCATGATGGCCATGGCGTCCAGTTTTCGAGACAAGCCGGTGCCCAGCGACCTTGCCGCCATCGGTGAGGTAGGACTAACC
GGAGAGCTGCGTGCCGTGAACACCTTGGGGCAGAGGCTGTCCGAGGTACGGCGTCTTGGCTTTACCAAATGCCTGATCCC
CAAGCGCACCCAGGGGAAGCTGGTGGTGCCGGAGGGGCTGGAACTCATCCGGGTGGCCAACATCCGGGAGGCTCTGGCGG
CCTTGCTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(364-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.24

100

0.555
  radA Streptococcus pneumoniae Rx1

51.209

99.781

0.511
  radA Streptococcus pneumoniae D39

51.209

99.781

0.511
  radA Streptococcus pneumoniae R6

51.209

99.781

0.511
  radA Streptococcus pneumoniae TIGR4

51.209

99.781

0.511
  radA Streptococcus mitis NCTC 12261

51.209

99.781

0.511
  radA Streptococcus mitis SK321

51.209

99.781

0.511

Multiple sequence alignment