Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F5I99_RS01525 Genome accession   NZ_CP044222
Coordinates   310296..311681 (+) Length   461 a.a.
NCBI ID   WP_151053324.1    Uniprot ID   A0A5J6L9U5
Organism   Nitrincola iocasae strain KXZD1103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 305296..316681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5I99_RS01505 (F5I99_01505) - 305980..307527 (-) 1548 WP_151053320.1 non-canonical purine NTP pyrophosphatase -
  F5I99_RS01510 (F5I99_01510) - 307520..308467 (-) 948 WP_191905920.1 beta-ribofuranosylaminobenzene 5'-phosphate synthase family protein -
  F5I99_RS01515 (F5I99_01515) - 308460..309053 (-) 594 WP_151053322.1 hypothetical protein -
  F5I99_RS01520 (F5I99_01520) - 309170..310195 (-) 1026 WP_191905921.1 DNA adenine methylase -
  F5I99_RS01525 (F5I99_01525) radA 310296..311681 (+) 1386 WP_151053324.1 DNA repair protein RadA Machinery gene
  F5I99_RS01530 (F5I99_01530) - 311686..312054 (-) 369 WP_151053325.1 PilZ domain-containing protein -
  F5I99_RS01535 (F5I99_01535) - 312255..313343 (+) 1089 WP_151053326.1 GGDEF domain-containing protein -
  F5I99_RS01540 (F5I99_01540) ettA 313340..314998 (-) 1659 WP_151053327.1 energy-dependent translational throttle protein EttA -
  F5I99_RS01545 (F5I99_01545) glyA 315231..316487 (+) 1257 WP_151053328.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48928.17 Da        Isoelectric Point: 7.2688

>NTDB_id=388884 F5I99_RS01525 WP_151053324.1 310296..311681(+) (radA) [Nitrincola iocasae strain KXZD1103]
MAKAKSAYVCNDCGADYTKWQGQCSACGAWNTLTEVRLSSASAAGSSRGARFDGYAGDSGLSARKRVVSLGEVDLEAMPR
IPTGTGELDRVLGGGLVPGSAVLIGGHPGAGKSTLLLQTLCHLAGHYPALYVTGEESLQQVALRASRLGLKADHLKMLSE
TSVETICDVAQQLKPKVIVIDSIQVMHVADVQSAPGSVSQVRESAAYLTRFAKQTGTVLFLVGHVTKDGSLAGPKVLEHM
IDCSLQLEGSSDSRFRTLRSHKNRFGAVNELGVFAMLETGLKEVRNPSSIFLTRGDEPSAGSVVMVVWEGTRPLLVELQA
LVDESHLSNPRRVAVGLDQNRLAMLLAVLNRHGGLMTGDQDVFVNVVGGVRVLETSADLALLLAIVSSFRDQALPHELIV
FGEVGLSGEIRPVPNGQERIREAAKHGFKRAIVPKANVPKEPVPGIQVIGVSVLADALDQI

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=388884 F5I99_RS01525 WP_151053324.1 310296..311681(+) (radA) [Nitrincola iocasae strain KXZD1103]
ATGGCTAAAGCAAAATCCGCGTATGTCTGTAATGACTGTGGCGCTGACTACACCAAGTGGCAGGGGCAGTGCAGTGCCTG
CGGTGCCTGGAATACCCTGACCGAGGTGCGACTCAGTAGTGCATCCGCAGCAGGTTCTAGCCGCGGCGCACGCTTTGATG
GCTATGCCGGAGATTCAGGTCTGAGTGCGCGTAAGCGTGTTGTCAGCCTGGGCGAGGTGGATCTTGAAGCCATGCCGCGT
ATTCCAACTGGCACAGGTGAATTGGATCGTGTGCTGGGCGGAGGGCTGGTGCCGGGTTCTGCGGTGTTGATTGGCGGGCA
TCCGGGGGCCGGTAAGAGTACGTTGTTGTTACAAACCCTGTGCCACCTTGCCGGACATTACCCTGCACTCTATGTTACGG
GTGAAGAGTCCTTGCAGCAGGTCGCTCTGCGTGCGTCGCGTCTGGGGTTGAAGGCAGATCATCTGAAAATGCTATCGGAG
ACTTCCGTAGAGACTATCTGTGATGTGGCACAGCAGCTTAAGCCGAAGGTGATCGTTATCGATTCGATTCAGGTGATGCA
TGTAGCAGATGTACAGTCAGCTCCGGGCTCTGTATCCCAGGTGCGTGAATCCGCCGCTTACCTGACCCGCTTTGCCAAGC
AAACCGGTACGGTGCTGTTTTTGGTGGGACATGTGACCAAGGATGGCTCATTAGCTGGCCCCAAAGTATTGGAGCATATG
ATTGACTGTTCGCTGCAGTTGGAAGGGTCGTCTGATAGTCGTTTTCGCACCTTGCGCAGTCATAAAAATCGCTTTGGCGC
TGTGAATGAACTGGGTGTGTTTGCCATGCTGGAAACCGGTTTAAAAGAGGTACGTAACCCCAGTTCTATTTTCCTGACGC
GGGGGGATGAGCCCAGTGCGGGCAGTGTGGTGATGGTGGTTTGGGAGGGGACGCGGCCTTTGCTGGTTGAGTTGCAGGCA
TTGGTGGATGAGTCGCATTTGTCTAATCCGCGCCGTGTAGCCGTGGGTCTGGATCAGAATCGTCTGGCGATGTTGTTGGC
GGTGCTAAATCGTCATGGCGGACTAATGACCGGCGATCAGGATGTGTTTGTCAATGTCGTTGGCGGCGTGCGTGTATTGG
AAACCAGTGCCGACCTGGCGTTGTTACTGGCTATTGTTTCCAGTTTTCGTGATCAGGCCTTGCCGCATGAATTGATCGTG
TTTGGCGAAGTGGGGTTGTCGGGTGAAATTCGCCCGGTGCCCAATGGCCAGGAACGCATTCGCGAAGCGGCCAAGCACGG
GTTCAAAAGAGCGATAGTGCCAAAGGCCAATGTGCCCAAGGAGCCCGTGCCGGGGATACAGGTGATAGGTGTCAGTGTTC
TGGCTGATGCACTGGATCAGATCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(91-229)

Subunit ChlI of Mg-chelatase (ChlI)

(354-437)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6L9U5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

99.783

0.482
  radA Streptococcus mitis NCTC 12261

42.827

100

0.434
  radA Streptococcus pneumoniae Rx1

42.827

100

0.434
  radA Streptococcus pneumoniae D39

42.827

100

0.434
  radA Streptococcus pneumoniae R6

42.827

100

0.434
  radA Streptococcus pneumoniae TIGR4

42.827

100

0.434
  radA Streptococcus mitis SK321

42.765

100

0.43

Multiple sequence alignment