Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   F5989_RS07145 Genome accession   NZ_CP044221
Coordinates   1441983..1442696 (-) Length   237 a.a.
NCBI ID   WP_002266885.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCH105     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1436983..1447696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5989_RS07135 (F5989_07270) abiGI 1439616..1440512 (+) 897 WP_002266883.1 abortive phage resistance protein AbiGI -
  F5989_RS07140 (F5989_07275) - 1440513..1441718 (+) 1206 WP_002266884.1 abortive infection system toxin AbiGii family protein -
  F5989_RS07145 (F5989_07280) treR 1441983..1442696 (-) 714 WP_002266885.1 trehalose operon repressor Regulator
  F5989_RS07150 (F5989_07285) treP 1442870..1444837 (+) 1968 WP_002266886.1 PTS system trehalose-specific EIIBC component -
  F5989_RS07155 (F5989_07290) treC 1444863..1446491 (+) 1629 WP_002289513.1 alpha,alpha-phosphotrehalase -
  F5989_RS10285 - 1446577..1446915 (+) 339 Protein_1346 lipase -

Sequence


Protein


Download         Length: 237 a.a.        Molecular weight: 27807.17 Da        Isoelectric Point: 9.7425

>NTDB_id=388848 F5989_RS07145 WP_002266885.1 1441983..1442696(-) (treR) [Streptococcus mutans strain NCH105]
MKKYEIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=388848 F5989_RS07145 WP_002266885.1 1441983..1442696(-) (treR) [Streptococcus mutans strain NCH105]
ATGAAAAAATATGAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAACGCATTAACTTTCCTGTCTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTAATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

99.156

100

0.992


Multiple sequence alignment