Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   F5989_RS03960 Genome accession   NZ_CP044221
Coordinates   820949..821989 (-) Length   346 a.a.
NCBI ID   WP_002264420.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCH105     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 815949..826989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5989_RS03940 (F5989_03995) - 817382..817918 (-) 537 WP_002262043.1 VanZ family protein -
  F5989_RS03945 (F5989_04000) rlmN 817918..819003 (-) 1086 WP_002264424.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  F5989_RS03950 (F5989_04005) - 819000..819548 (-) 549 WP_002264423.1 YutD family protein -
  F5989_RS03955 (F5989_04010) - 819545..820876 (-) 1332 WP_002264422.1 bifunctional metallophosphatase/5'-nucleotidase -
  F5989_RS03960 (F5989_04015) sepM 820949..821989 (-) 1041 WP_002264420.1 S16 family serine protease SepM Regulator
  F5989_RS03965 (F5989_04020) coaD 821967..822467 (-) 501 WP_002264419.1 pantetheine-phosphate adenylyltransferase -
  F5989_RS03970 (F5989_04025) rsmD 822457..822996 (-) 540 WP_002268139.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  F5989_RS03975 (F5989_04030) - 823580..825355 (-) 1776 WP_002268138.1 oleate hydratase -
  F5989_RS03980 (F5989_04035) - 825476..826042 (-) 567 WP_002264416.1 TetR/AcrR family transcriptional regulator -
  F5989_RS03985 (F5989_04040) - 826238..826483 (-) 246 WP_002267028.1 hypothetical protein -
  F5989_RS03990 (F5989_04045) - 826524..826727 (-) 204 WP_002263011.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37952.90 Da        Isoelectric Point: 10.1655

>NTDB_id=388825 F5989_RS03960 WP_002264420.1 820949..821989(-) (sepM) [Streptococcus mutans strain NCH105]
MKTNKKFKWWLISGISLILLLMVFFFPLPYYLEMPGGAYDIRSVVTVNHKEDKEKGSYNFVAVSLSKATPIQVLYAWLTP
FTEITSAKETTGGVSDADYMRINQFYMETSQNGAIYKALSLAHKKASFNYMGVYVLQVSKNSTFKGVLNIADTVTGVNDK
TFHSSKELIKYVSGLKLGSKVSVQYTSENKKKTAKGKVIKLSNGKNGIGIGLVDHTKVTSDDKIEFSTNGIGGPSAGLMF
TLDIYDQLVKEDLRKGRIIAGTGTIGEDGSVGDIGGADMKVAAADRINADIFFVPNNPVSKATLKKNPKALTNYQEAKQA
AKKLGTKMKIVPVKNVQEAIDYLRKH

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=388825 F5989_RS03960 WP_002264420.1 820949..821989(-) (sepM) [Streptococcus mutans strain NCH105]
GTGAAAACAAACAAAAAATTTAAATGGTGGCTAATCAGCGGTATCAGTCTTATTTTGCTTTTAATGGTATTCTTTTTTCC
TCTTCCTTACTATTTAGAAATGCCCGGCGGAGCCTATGATATTCGTTCTGTTGTGACGGTTAATCATAAAGAAGATAAAG
AGAAAGGATCTTATAATTTTGTAGCTGTCTCTCTTAGTAAGGCAACCCCCATACAAGTCCTCTATGCTTGGCTGACCCCT
TTTACAGAAATTACCAGTGCCAAGGAAACAACTGGTGGTGTTAGTGATGCGGATTATATGAGGATTAATCAGTTTTATAT
GGAAACCTCACAAAATGGAGCTATCTATAAAGCTCTTTCTTTAGCTCATAAAAAGGCAAGCTTTAATTATATGGGTGTTT
ATGTTTTGCAGGTTAGTAAGAATTCAACATTCAAGGGTGTTTTAAATATTGCTGATACTGTAACAGGCGTTAATGACAAG
ACCTTTCATAGTTCAAAAGAATTGATTAAATATGTGTCTGGACTGAAATTAGGCAGCAAGGTCAGTGTTCAATATACTTC
TGAAAATAAGAAGAAAACAGCCAAGGGCAAAGTTATTAAATTGTCAAATGGCAAAAATGGTATTGGCATTGGCTTGGTTG
ATCATACCAAGGTCACTTCTGATGATAAAATCGAATTTAGCACAAATGGTATTGGAGGGCCAAGTGCCGGTCTCATGTTT
ACCCTTGATATTTACGATCAACTAGTGAAAGAGGACTTACGTAAGGGTCGTATTATTGCAGGTACTGGTACTATTGGAGA
AGACGGGTCTGTTGGGGATATTGGCGGTGCCGATATGAAAGTGGCAGCAGCAGATAGGATTAATGCAGATATCTTTTTTG
TTCCCAATAATCCTGTAAGTAAGGCAACTTTGAAAAAAAATCCCAAAGCTCTCACTAATTATCAAGAAGCTAAACAGGCT
GCTAAAAAATTAGGCACTAAGATGAAGATTGTCCCTGTTAAAAATGTGCAGGAGGCTATTGATTACCTAAGAAAACACTA
A

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(131-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

99.711

100

0.997

Multiple sequence alignment