Detailed information NTG0388806

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: HKJ33_RS05325
• Genome accession: NZ_CP052853
• Coordinates: 1166819..1168255 (-)
• Length: 478 a.a.
• NCBI ID: WP_031345817.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain RH1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1161819..1173255

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKJ33_RS05310 (HKJ33_05430)	-	1163848..1165041 (-)	1194	Protein_1044	toprim domain-containing protein	-
HKJ33_RS05315 (HKJ33_05435)	-	1165007..1166005 (-)	999	WP_169709991.1	MBL fold metallo-hydrolase	-
HKJ33_RS05320 (HKJ33_05440)	-	1166136..1166822 (-)	687	WP_169709992.1	TIGR02453 family protein	-
HKJ33_RS05325 (HKJ33_05445)	sbcB	1166819..1168255 (-)	1437	WP_031345817.1	exodeoxyribonuclease I	Machinery gene
HKJ33_RS12500 (HKJ33_05450)	-	1168443..1168733 (+)	291	WP_027700686.1	hypothetical protein	-
HKJ33_RS05330 (HKJ33_05455)	-	1168703..1169557 (+)	855	WP_004085388.1	hypothetical protein	-
HKJ33_RS05335 (HKJ33_05460)	-	1170480..1172117 (+)	1638	WP_038259951.1	Na+/H+ antiporter	-
HKJ33_RS05340 (HKJ33_05465)	-	1172492..1173040 (+)	549	WP_004085386.1	hypothetical protein	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 54942.21 Da
• Isoelectric Point: 6.5860

>NTDB_id=388806 HKJ33_RS05325 WP_031345817.1 1166819..1168255(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain RH1]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGISEVAAFA
HITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGL
NPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide

• Length: 1437 bp

>NTDB_id=388806 HKJ33_RS05325 WP_031345817.1 1166819..1168255(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain RH1]
ATGCCCCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCCCGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTCCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGAATTACCCCGCAACACGCACAACGTGAAGGCATCAGCGAAGTCGCAGCCTTCGCG
CACATTACAATGCAGATGACACAACCACACACCTGCTCCCTCGGCTACAACACGCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCACTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCCCCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTCTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTAAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCCTG
AACCCGGCCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCGGATTTGGCCGAAAAAGTCCGCCACGTCTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTTCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCCCTGCTGACACCTTGGCGACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (206-472)

• Exonuclease (RNase_T) (7-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	40.421	99.372	0.402