Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   HKJ33_RS03985 Genome accession   NZ_CP052853
Coordinates   869608..870999 (-) Length   463 a.a.
NCBI ID   WP_011097721.1    Uniprot ID   B2I9J4
Organism   Xylella fastidiosa subsp. multiplex strain RH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 864608..875999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKJ33_RS03965 (HKJ33_04070) truA 865287..866057 (+) 771 WP_031345879.1 tRNA pseudouridine(38-40) synthase TruA -
  HKJ33_RS03970 (HKJ33_04075) - 866054..866716 (+) 663 WP_004083826.1 phosphoribosylanthranilate isomerase -
  HKJ33_RS03975 (HKJ33_04080) trpB 867218..868435 (+) 1218 WP_004083824.1 tryptophan synthase subunit beta -
  HKJ33_RS03980 (HKJ33_04085) trpA 868561..869367 (+) 807 WP_004083823.1 tryptophan synthase subunit alpha -
  HKJ33_RS03985 (HKJ33_04090) radA/sms 869608..870999 (-) 1392 WP_011097721.1 DNA repair protein RadA Machinery gene
  HKJ33_RS03990 (HKJ33_04095) - 871177..872142 (+) 966 WP_169709964.1 LLM class flavin-dependent oxidoreductase -
  HKJ33_RS03995 (HKJ33_04100) - 872267..872836 (-) 570 WP_249321996.1 hypothetical protein -
  HKJ33_RS04000 (HKJ33_04105) recQ 872959..874761 (-) 1803 WP_012337750.1 DNA helicase RecQ Machinery gene
  HKJ33_RS04005 (HKJ33_04110) - 874941..875483 (-) 543 WP_004083813.1 Dps family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49369.62 Da        Isoelectric Point: 7.6825

>NTDB_id=388797 HKJ33_RS03985 WP_011097721.1 869608..870999(-) (radA/sms) [Xylella fastidiosa subsp. multiplex strain RH1]
MTKNAASKARIAYVCTECGTEYSKWQGQCTECGTWNCLSQITLGNAGSVKNPTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASNLPTLYVTGEESLAQVAGRAVRLDLPLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTEALTAAPGSVSQVRESAAQLVRYAKETGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSDQPGSCVMVTREGTRPLMVEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAVRSSLCNRALPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKHAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=388797 HKJ33_RS03985 WP_011097721.1 869608..870999(-) (radA/sms) [Xylella fastidiosa subsp. multiplex strain RH1]
ATGACCAAAAACGCCGCAAGCAAAGCCAGGATTGCCTATGTCTGCACTGAATGCGGCACCGAATACAGCAAATGGCAGGG
ACAGTGCACCGAATGCGGCACCTGGAATTGCTTAAGCCAAATCACCCTCGGAAATGCAGGATCTGTCAAAAACCCAACCA
TGAAGCACGGCAATTGGACCGGTCAGCTCGACCCACCCAAGATCACCGCATTGAAGGACGTGCAACACAGCGAACAAGCA
CGCATCTCCACCGGCATTGGCGAGTTTGACCGCGTCCTAGGAGGCGGCCTGGTGGCAGGCGCGGTAGTCCTGATTGGTGG
CGATCCAGGCATCGGCAAATCCACATTGCTACTGCAAGCACTAGCACGGATGGCAAGCAACCTACCCACACTGTATGTGA
CGGGTGAAGAATCGCTGGCACAGGTCGCCGGGCGTGCGGTGCGCCTGGATCTGCCCCTGGAGGGCTTAAACGCACTCGCA
GAAACCGGCATTGAATCAATCCTGCAACACGCCAGCAGCGCACGGCCACGACTGATTGTCGCCGACTCAGTACAGACCCT
ATGGACCGAAGCACTGACCGCAGCACCCGGTTCAGTCAGCCAAGTACGAGAAAGCGCCGCACAGCTAGTGCGCTACGCCA
AAGAAACCGGCACAACCGTGTTCCTGGTTGGCCATGTCACCAAAGAAGGTGGCATCGCCGGCCCACGCGTACTGGAGCAC
ATGGTAGATGCCGTGCTGTATTTTGAAGGCGAAAGCGGTAGCCGTTTCCGTCTCCTGCGGGCATTCAAAAATCGCTTTGG
AGCAGTCAACGAACTAGGCGTCTTTGCAATGAGCGAAAAAGGCTTGAAAGAGGTCGCCAATCCATCAGCCATTTTTTTAT
CCGGCAGAAACAGCGACCAACCAGGCAGCTGTGTGATGGTCACGCGTGAGGGAACACGTCCTCTGATGGTCGAAGTACAA
GCACTCGTCGATACCTCGCCACTGTCCAACCCACGCCGGGTTACCGTCGGGCTGGAACAAAATCGGCTAGCAATGCTGTT
AGCCGTATTGCATCGTCACGGTAACGTCCTGGTTGGTGACCAAGACGTATTCATCAACATCGTTGGCGGCATCCGCGTTC
AAGAGACAGCCGCAGATCTACCTGTACTACTGGCGGTCCGGTCCTCGTTATGCAACCGGGCGCTGCCAGAAAAGACCATC
GCCTTCGGCGAAGTGGGTTTATCCGGTGAAATCCGCCCGGTCCCCAACGGCGAAGAGCGCCTCAGAGAAGCGGCAACACA
CGGCTTTAAGCACGCCATTGTGCCAAAAGCCAACGCACCCAAGAGTGCCATCAAGGACATGCAGATCATCGCCGTAGAAC
GCCTGGATCAGGCGCTGGAAGCAAGCTATTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-38)

Subunit ChlI of Mg-chelatase (ChlI)

(359-438)

AAA domain (AAA_25)

(91-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2I9J4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.415

98.92

0.449
  radA Streptococcus pneumoniae Rx1

42.702

99.136

0.423
  radA Streptococcus pneumoniae D39

42.702

99.136

0.423
  radA Streptococcus pneumoniae R6

42.702

99.136

0.423
  radA Streptococcus pneumoniae TIGR4

42.702

99.136

0.423
  radA Streptococcus mitis NCTC 12261

42.702

99.136

0.423
  radA Streptococcus mitis SK321

42.484

99.136

0.421