Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   F6X00_RS13480 Genome accession   NZ_CP044206
Coordinates   2724204..2725625 (+) Length   473 a.a.
NCBI ID   WP_045623666.1    Uniprot ID   -
Organism   Vibrio vulnificus strain Vv180806     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2719204..2730625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X00_RS13455 (F6X00_13800) cobC 2719887..2720525 (-) 639 WP_039553421.1 alpha-ribazole phosphatase -
  F6X00_RS13460 (F6X00_13805) cobU 2720535..2721095 (-) 561 WP_045620120.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  F6X00_RS13465 (F6X00_13810) - 2721098..2721865 (-) 768 WP_130248552.1 adenosylcobinamide-GDP ribazoletransferase -
  F6X00_RS13470 (F6X00_13815) cobT 2721867..2722895 (-) 1029 WP_182289925.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  F6X00_RS13475 (F6X00_13825) - 2723432..2724130 (+) 699 WP_045597850.1 oxidoreductase -
  F6X00_RS13480 (F6X00_13830) sbcB 2724204..2725625 (+) 1422 WP_045623666.1 exodeoxyribonuclease I Machinery gene
  F6X00_RS13485 (F6X00_13835) - 2725672..2726043 (+) 372 WP_011080627.1 CidA/LrgA family protein -
  F6X00_RS13490 (F6X00_13840) - 2726046..2726723 (+) 678 WP_011080628.1 LrgB family protein -
  F6X00_RS13495 (F6X00_13845) - 2727036..2727428 (+) 393 WP_011150110.1 SulA-like leucine-rich domain-containing protein -
  F6X00_RS13500 (F6X00_13850) - 2727631..2728734 (+) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  F6X00_RS13505 (F6X00_13855) - 2728808..2729212 (-) 405 WP_011080631.1 hypothetical protein -
  F6X00_RS13510 (F6X00_13860) - 2729451..2730218 (-) 768 WP_182289927.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54746.00 Da        Isoelectric Point: 5.1722

>NTDB_id=388764 F6X00_RS13480 WP_045623666.1 2724204..2725625(+) (sbcB) [Vibrio vulnificus strain Vv180806]
MQQDNQPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTMLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=388764 F6X00_RS13480 WP_045623666.1 2724204..2725625(+) (sbcB) [Vibrio vulnificus strain Vv180806]
ATGCAGCAAGACAATCAGCCCTCTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATTGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGCTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATAGTGCCGTTGGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCACCAGCCAAAACCCTCACTGCGGAGAATGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCATGCTGTACGACGGTTTCTTCTCGCCTGCCG
ATAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.508

99.789

0.803

Multiple sequence alignment