Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HH306_RS28590 Genome accession   NZ_CP052759
Coordinates   6088295..6088819 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain LYT4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6083295..6093819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH306_RS28575 aroB 6084423..6085529 (-) 1107 WP_003146400.1 3-dehydroquinate synthase -
  HH306_RS28580 aroK 6085579..6086097 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HH306_RS28585 pilQ 6086109..6088241 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  HH306_RS28590 comL/pilP 6088295..6088819 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HH306_RS28595 pilO 6088816..6089439 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  HH306_RS28600 pilN 6089436..6090032 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  HH306_RS28605 pilM 6090032..6091096 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HH306_RS28610 - 6091281..6093752 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=388762 HH306_RS28590 WP_003116136.1 6088295..6088819(-) (comL/pilP) [Pseudomonas aeruginosa strain LYT4]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=388762 HH306_RS28590 WP_003116136.1 6088295..6088819(-) (comL/pilP) [Pseudomonas aeruginosa strain LYT4]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTTCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362