Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   F6X00_RS06680 Genome accession   NZ_CP044206
Coordinates   1412254..1412772 (+) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain Vv180806     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407254..1417772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6X00_RS06670 (F6X00_06795) gshA 1409995..1411560 (+) 1566 WP_047108898.1 glutamate--cysteine ligase -
  F6X00_RS06675 (F6X00_06800) - 1411598..1412203 (+) 606 WP_224655350.1 hypothetical protein -
  F6X00_RS06680 (F6X00_06805) luxS 1412254..1412772 (+) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  F6X00_RS06685 (F6X00_06810) - 1412862..1414139 (-) 1278 WP_011079538.1 HlyC/CorC family transporter -
  F6X00_RS06690 (F6X00_06815) - 1414226..1415020 (-) 795 WP_011079539.1 inner membrane protein YpjD -
  F6X00_RS06695 (F6X00_06820) ffh 1415234..1416610 (+) 1377 WP_011079540.1 signal recognition particle protein -
  F6X00_RS06700 (F6X00_06825) rpsP 1416885..1417133 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  F6X00_RS06705 (F6X00_06830) rimM 1417149..1417697 (+) 549 WP_011079542.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=388755 F6X00_RS06680 WP_011079537.1 1412254..1412772(+) (luxS) [Vibrio vulnificus strain Vv180806]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=388755 F6X00_RS06680 WP_011079537.1 1412254..1412772(+) (luxS) [Vibrio vulnificus strain Vv180806]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment