Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | F6X00_RS05415 | Genome accession | NZ_CP044206 |
| Coordinates | 1149719..1150309 (+) | Length | 196 a.a. |
| NCBI ID | WP_045598453.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain Vv180806 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1144719..1155309
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6X00_RS05400 (F6X00_05505) | oxyR | 1145104..1146003 (+) | 900 | WP_011079350.1 | DNA-binding transcriptional regulator OxyR | - |
| F6X00_RS05405 (F6X00_05510) | - | 1146069..1148582 (-) | 2514 | WP_103175341.1 | penicillin-binding protein 1A | - |
| F6X00_RS05410 (F6X00_05515) | pilM | 1148722..1149729 (+) | 1008 | WP_011151279.1 | type IV pilus assembly protein PilM | Machinery gene |
| F6X00_RS05415 (F6X00_05520) | pilN | 1149719..1150309 (+) | 591 | WP_045598453.1 | PilN domain-containing protein | Machinery gene |
| F6X00_RS05420 (F6X00_05525) | pilO | 1150302..1150892 (+) | 591 | WP_011079354.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| F6X00_RS05425 (F6X00_05530) | pilP | 1150882..1151394 (+) | 513 | WP_011079355.1 | pilus assembly protein PilP | Machinery gene |
| F6X00_RS05430 (F6X00_05535) | pilQ | 1151408..1153192 (+) | 1785 | WP_108695110.1 | type IV pilus secretin PilQ | Machinery gene |
| F6X00_RS05435 (F6X00_05540) | aroK | 1153394..1153912 (+) | 519 | WP_011079357.1 | shikimate kinase AroK | - |
| F6X00_RS05440 (F6X00_05545) | aroB | 1153945..1155036 (+) | 1092 | WP_011079358.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22658.89 Da Isoelectric Point: 7.6440
>NTDB_id=388743 F6X00_RS05415 WP_045598453.1 1149719..1150309(+) (pilN) [Vibrio vulnificus strain Vv180806]
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKDVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
MQHKINLLPWREHKREEHKRRFVSLVALGALIAVGIQWGIGQYFSYQQRLQQERLDYLTHYIAQLDQRIQAMNIAKEEHS
QILARLKVVESLQAERNKTTAFMNLMTELIPEGVYVDKIKMNTNDVELAGISDSTARLATMLDNLERSTFLKDVEMHSIV
HDKKRFGKSFQTFTVSFVFDEHADSANTLAKEGNHG
Nucleotide
Download Length: 591 bp
>NTDB_id=388743 F6X00_RS05415 WP_045598453.1 1149719..1150309(+) (pilN) [Vibrio vulnificus strain Vv180806]
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACATAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCTGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGACGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTTTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
ATGCAGCATAAGATCAACCTGTTACCTTGGCGTGAACATAAGCGTGAGGAGCATAAACGTCGTTTTGTCAGTCTGGTCGC
ATTAGGTGCCCTGATCGCGGTCGGTATTCAGTGGGGCATTGGCCAGTACTTTTCATACCAACAACGTTTGCAGCAAGAGC
GTCTCGATTATCTTACCCACTATATCGCACAGTTGGATCAGCGTATCCAAGCGATGAACATTGCCAAGGAAGAGCATAGC
CAGATCCTCGCTCGACTCAAGGTTGTCGAGTCGCTTCAAGCGGAACGCAACAAAACCACCGCATTTATGAACTTGATGAC
GGAACTGATCCCTGAGGGGGTGTATGTCGACAAGATCAAAATGAACACCAACGACGTTGAGTTGGCTGGCATAAGCGATA
GTACCGCTCGACTCGCCACCATGTTGGATAATTTGGAACGTTCCACCTTTCTAAAAGACGTGGAAATGCATTCGATTGTT
CATGACAAGAAGCGTTTTGGTAAGAGCTTCCAGACGTTTACCGTTTCTTTTGTGTTTGATGAACATGCCGATTCTGCCAA
TACGTTGGCCAAGGAGGGGAATCATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
68.508 |
92.347 |
0.633 |
| pilN | Vibrio cholerae strain A1552 |
63.842 |
90.306 |
0.577 |