Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HALSA_RS13035 Genome accession   NC_014654
Coordinates   2139935..2140576 (-) Length   213 a.a.
NCBI ID   WP_238524747.1    Uniprot ID   -
Organism   Halanaerobium hydrogeniformans     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2134935..2145576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HALSA_RS09880 (Halsa_1943) - 2135039..2135830 (-) 792 WP_013406430.1 HutP family protein -
  HALSA_RS09885 (Halsa_1944) ispF 2135817..2136350 (-) 534 WP_013406431.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HALSA_RS09890 (Halsa_1945) ispD 2136351..2137040 (-) 690 WP_013406432.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HALSA_RS09895 (Halsa_1946) - 2137057..2138142 (-) 1086 WP_013406433.1 PIN/TRAM domain-containing protein -
  HALSA_RS09900 (Halsa_1947) - 2138176..2138676 (-) 501 WP_013406434.1 CarD family transcriptional regulator -
  HALSA_RS09905 (Halsa_1948) disA 2138794..2139873 (-) 1080 WP_013406435.1 DNA integrity scanning diadenylate cyclase DisA -
  HALSA_RS13035 radA 2139935..2140576 (-) 642 WP_238524747.1 magnesium chelatase domain-containing protein Machinery gene
  HALSA_RS13040 - 2140642..2141307 (-) 666 WP_238524748.1 DnaB-like helicase C-terminal domain-containing protein -
  HALSA_RS09915 (Halsa_1950) - 2141430..2143883 (-) 2454 WP_013406436.1 ATP-dependent Clp protease ATP-binding subunit -
  HALSA_RS09920 (Halsa_1951) - 2143903..2144931 (-) 1029 WP_013406437.1 protein arginine kinase -
  HALSA_RS09925 (Halsa_1952) - 2144912..2145457 (-) 546 WP_013406438.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23360.34 Da        Isoelectric Point: 10.5307

>NTDB_id=38874 HALSA_RS13035 WP_238524747.1 2139935..2140576(-) (radA) [Halanaerobium hydrogeniformans]
MYRMLRAKKNRYGSTNEIGVFEMKESGIKEVSNPSSFFINERPADVSGSIITPILEGSRVLLVELQALVTDAAFSSPQRL
SKGVNHKRLSLLLAVLEKRLGLNFKDKDVNMNITGGINVEEPGLDLAIAAAVISSYRNIAINNKSAVIGEIGLAGEVRAV
GQIKKRVKELKKLGFKHFVIPAGNLKSLSFDQEIKVDGVKNIAEFIKIILKNK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=38874 HALSA_RS13035 WP_238524747.1 2139935..2140576(-) (radA) [Halanaerobium hydrogeniformans]
ATGTATAGAATGCTGAGGGCGAAAAAGAATCGATATGGTTCAACTAATGAGATTGGTGTTTTTGAAATGAAAGAAAGTGG
TATTAAAGAGGTTAGCAATCCTTCAAGTTTTTTTATCAACGAAAGACCAGCAGATGTTTCTGGATCAATTATCACCCCTA
TTTTAGAAGGTAGTAGGGTGCTTTTAGTTGAACTTCAAGCTTTGGTTACAGATGCTGCTTTTTCTTCACCCCAGCGGTTA
AGCAAGGGCGTTAATCATAAAAGGCTTTCACTTTTGCTTGCTGTTTTAGAAAAAAGACTTGGTCTTAATTTCAAAGATAA
AGATGTAAATATGAATATTACTGGTGGTATTAATGTAGAAGAACCCGGACTTGATCTTGCTATTGCTGCTGCAGTTATTT
CCAGTTATCGCAATATAGCTATAAATAATAAAAGTGCTGTAATAGGAGAGATCGGTCTTGCAGGTGAAGTAAGAGCTGTA
GGCCAGATTAAAAAAAGAGTTAAAGAACTTAAAAAATTGGGTTTTAAACATTTTGTGATTCCAGCTGGTAATTTAAAGAG
TTTAAGTTTCGATCAGGAGATTAAAGTTGATGGAGTTAAAAATATTGCTGAGTTTATTAAAATTATTTTAAAAAACAAAT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(99-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.282

98.122

0.484
  radA Streptococcus pneumoniae Rx1

44.66

96.714

0.432
  radA Streptococcus pneumoniae D39

44.66

96.714

0.432
  radA Streptococcus pneumoniae R6

44.66

96.714

0.432
  radA Streptococcus pneumoniae TIGR4

44.66

96.714

0.432
  radA Streptococcus mitis NCTC 12261

44.66

96.714

0.432
  radA Streptococcus mitis SK321

44.66

96.714

0.432

Multiple sequence alignment