Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HH306_RS18555 Genome accession   NZ_CP052759
Coordinates   3982565..3983161 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain LYT4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3977565..3988161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH306_RS32265 - 3977959..3978108 (-) 150 Protein_3673 hypothetical protein -
  HH306_RS18535 - 3978201..3979784 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  HH306_RS18540 - 3979781..3980668 (+) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  HH306_RS18545 - 3980742..3981281 (+) 540 WP_003103931.1 CbrC family protein -
  HH306_RS18550 - 3981294..3982442 (-) 1149 WP_049247336.1 acyl-CoA dehydrogenase family protein -
  HH306_RS18555 recR 3982565..3983161 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  HH306_RS18560 - 3983240..3983566 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  HH306_RS18565 dnaX 3983612..3985699 (-) 2088 WP_031653402.1 DNA polymerase III subunit gamma/tau -
  HH306_RS18570 - 3985736..3986602 (+) 867 WP_003120462.1 ABC transporter substrate-binding protein -
  HH306_RS18580 - 3986856..3987233 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=388733 HH306_RS18555 WP_003087237.1 3982565..3983161(-) (recR) [Pseudomonas aeruginosa strain LYT4]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=388733 HH306_RS18555 WP_003087237.1 3982565..3983161(-) (recR) [Pseudomonas aeruginosa strain LYT4]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48