Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HH306_RS09710 Genome accession   NZ_CP052759
Coordinates   2049404..2049733 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain LYT4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2044404..2054733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH306_RS09695 - 2044458..2045477 (+) 1020 WP_003113413.1 glycosyltransferase family 4 protein -
  HH306_RS09700 - 2045555..2046651 (+) 1097 Protein_1923 IS3 family transposase -
  HH306_RS09705 - 2047216..2049213 (+) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HH306_RS09710 comEA/comE1 2049404..2049733 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  HH306_RS09720 - 2049950..2051146 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  HH306_RS09725 uvrB 2051334..2053346 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=388706 HH306_RS09710 WP_003138486.1 2049404..2049733(+) (comEA/comE1) [Pseudomonas aeruginosa strain LYT4]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=388706 HH306_RS09710 WP_003138486.1 2049404..2049733(+) (comEA/comE1) [Pseudomonas aeruginosa strain LYT4]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment