Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F4V17_RS02205 Genome accession   NZ_CP044203
Coordinates   465841..466446 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 460841..471446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V17_RS02185 - 461236..462996 (-) 1761 WP_000156458.1 AAA family ATPase -
  F4V17_RS02190 matP 463182..463634 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  F4V17_RS02195 ompA 463706..464758 (-) 1053 WP_001670727.1 porin OmpA -
  F4V17_RS02200 sulA 465115..465624 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  F4V17_RS02205 sxy/tfoX 465841..466446 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  F4V17_RS02210 yccS 466433..468586 (-) 2154 WP_000950877.1 YccS family putative transporter -
  F4V17_RS02215 - 468605..469051 (-) 447 WP_001261222.1 YccF domain-containing protein -
  F4V17_RS02220 helD 469175..471229 (+) 2055 WP_000420500.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=388694 F4V17_RS02205 WP_001202375.1 465841..466446(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=388694 F4V17_RS02205 WP_001202375.1 465841..466446(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment