Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F4V18_RS21460 Genome accession   NZ_CP044200
Coordinates   4441693..4442298 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4436693..4447298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V18_RS21440 - 4437088..4438848 (-) 1761 WP_063809327.1 AAA family ATPase -
  F4V18_RS21445 matP 4439034..4439486 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  F4V18_RS21450 ompA 4439558..4440610 (-) 1053 WP_001670727.1 porin OmpA -
  F4V18_RS21455 sulA 4440967..4441476 (-) 510 WP_063809326.1 SOS-induced cell division inhibitor SulA -
  F4V18_RS21460 sxy/tfoX 4441693..4442298 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  F4V18_RS21465 yccS 4442285..4444438 (-) 2154 WP_000950881.1 YccS family putative transporter -
  F4V18_RS21470 - 4444457..4444903 (-) 447 WP_023243628.1 YccF domain-containing protein -
  F4V18_RS21475 helD 4445027..4447081 (+) 2055 WP_063809325.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=388693 F4V18_RS21460 WP_001202375.1 4441693..4442298(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=388693 F4V18_RS21460 WP_001202375.1 4441693..4442298(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Corvallis strain AR-0406]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAATATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGTGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATATTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTGTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment