Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   HH306_RS02085 Genome accession   NZ_CP052759
Coordinates   453408..453773 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain LYT4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448408..458773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH306_RS02055 pyrR 449030..449542 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HH306_RS02060 ruvX 449654..450088 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  HH306_RS02065 - 450088..450657 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  HH306_RS02070 - 450706..451599 (-) 894 WP_003162015.1 energy transducer TonB -
  HH306_RS02075 gshB 451746..452699 (-) 954 WP_003100943.1 glutathione synthase -
  HH306_RS02080 pilG 452954..453361 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  HH306_RS02085 pilH 453408..453773 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  HH306_RS02090 - 453824..454360 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  HH306_RS02095 pilJ 454445..456493 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  HH306_RS02100 pilK 456554..457429 (+) 876 WP_033981704.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=388689 HH306_RS02085 WP_003084587.1 453408..453773(+) (pilH) [Pseudomonas aeruginosa strain LYT4]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=388689 HH306_RS02085 WP_003084587.1 453408..453773(+) (pilH) [Pseudomonas aeruginosa strain LYT4]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTAATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364