Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HIN86_RS11130 Genome accession   NZ_CP051875
Coordinates   2294598..2295233 (-) Length   211 a.a.
NCBI ID   WP_000264035.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2289598..2300233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS11105 (HIN86_11105) - 2289654..2290634 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  HIN86_RS11110 (HIN86_11110) kdsB 2290646..2291407 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HIN86_RS11115 (HIN86_11115) lpxK 2291417..2292427 (-) 1011 WP_169030989.1 tetraacyldisaccharide 4'-kinase -
  HIN86_RS11120 (HIN86_11120) msbA 2292430..2294157 (-) 1728 WP_001070731.1 lipid A export permease/ATP-binding protein MsbA -
  HIN86_RS11125 (HIN86_11125) - 2294154..2294582 (-) 429 WP_000669683.1 ExbD/TolR family protein -
  HIN86_RS11130 (HIN86_11130) exbB 2294598..2295233 (-) 636 WP_000264035.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HIN86_RS11135 (HIN86_11135) - 2295283..2296170 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  HIN86_RS11140 (HIN86_11140) - 2296167..2296949 (-) 783 WP_000057212.1 ParA family protein -
  HIN86_RS11145 (HIN86_11145) rsmG 2296971..2297603 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HIN86_RS11150 (HIN86_11150) murU 2297691..2298380 (-) 690 WP_032000517.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  HIN86_RS11155 (HIN86_11155) - 2298380..2299393 (-) 1014 WP_001096106.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23211.10 Da        Isoelectric Point: 6.4861

>NTDB_id=388650 HIN86_RS11130 WP_000264035.1 2294598..2295233(-) (exbB) [Acinetobacter baumannii strain Ab-B004d-c]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDNNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=388650 HIN86_RS11130 WP_000264035.1 2294598..2295233(-) (exbB) [Acinetobacter baumannii strain Ab-B004d-c]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATAATAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393