Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F4V14_RS16590 Genome accession   NZ_CP044186
Coordinates   3455279..3455884 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Cubana strain AR-0402     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3450279..3460884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V14_RS16570 - 3450674..3452434 (-) 1761 WP_000156448.1 AAA family ATPase -
  F4V14_RS16575 matP 3452620..3453072 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  F4V14_RS16580 ompA 3453144..3454196 (-) 1053 WP_001670727.1 porin OmpA -
  F4V14_RS16585 sulA 3454553..3455062 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  F4V14_RS16590 sxy/tfoX 3455279..3455884 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  F4V14_RS16595 yccS 3455871..3458024 (-) 2154 WP_020898645.1 YccS family putative transporter -
  F4V14_RS16600 - 3458043..3458489 (-) 447 WP_001261222.1 YccF domain-containing protein -
  F4V14_RS16605 helD 3458613..3460667 (+) 2055 WP_017465794.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=388644 F4V14_RS16590 WP_001202375.1 3455279..3455884(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Cubana strain AR-0402]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=388644 F4V14_RS16590 WP_001202375.1 3455279..3455884(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Cubana strain AR-0402]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment