Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   HIN86_RS03045 Genome accession   NZ_CP051875
Coordinates   634902..635417 (-) Length   171 a.a.
NCBI ID   WP_057049040.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629902..640417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS03020 (HIN86_03020) - 630447..632090 (+) 1644 WP_002061398.1 nitrite/sulfite reductase -
  HIN86_RS03025 (HIN86_03025) - 632083..632568 (+) 486 WP_000935248.1 DUF934 domain-containing protein -
  HIN86_RS03030 (HIN86_03030) - 632652..633005 (+) 354 WP_031999349.1 DMT family transporter -
  HIN86_RS03035 (HIN86_03035) - 633048..633491 (-) 444 WP_001176580.1 VOC family protein -
  HIN86_RS03040 (HIN86_03040) - 633618..634793 (-) 1176 WP_000129965.1 thiolase family protein -
  HIN86_RS03045 (HIN86_03045) fimT 634902..635417 (-) 516 WP_057049040.1 GspH/FimT family pseudopilin Machinery gene
  HIN86_RS03050 (HIN86_03050) omp38 635799..636848 (+) 1050 WP_000777873.1 outer membrane protein Omp38 -
  HIN86_RS03055 (HIN86_03055) - 636973..637116 (-) 144 WP_162138624.1 hypothetical protein -
  HIN86_RS03060 (HIN86_03060) - 637135..638340 (-) 1206 WP_000512699.1 RtcB family protein -
  HIN86_RS03065 (HIN86_03065) - 638617..640077 (-) 1461 WP_031999345.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19648.94 Da        Isoelectric Point: 8.8196

>NTDB_id=388626 HIN86_RS03045 WP_057049040.1 634902..635417(-) (fimT) [Acinetobacter baumannii strain Ab-B004d-c]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFVKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=388626 HIN86_RS03045 WP_057049040.1 634902..635417(-) (fimT) [Acinetobacter baumannii strain Ab-B004d-c]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGTAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAT
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTTCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427