Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F4V15_RS19280 Genome accession   NZ_CP044184
Coordinates   3979041..3979646 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Stanley strain AR-0403     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3974041..3984646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V15_RS19260 - 3974436..3976196 (-) 1761 WP_023204727.1 AAA family ATPase -
  F4V15_RS19265 matP 3976382..3976834 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  F4V15_RS19270 ompA 3976906..3977958 (-) 1053 WP_001670727.1 porin OmpA -
  F4V15_RS19275 sulA 3978315..3978824 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  F4V15_RS19280 sxy/tfoX 3979041..3979646 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  F4V15_RS19285 yccS 3979633..3981786 (-) 2154 WP_000950876.1 YccS family putative transporter -
  F4V15_RS19290 - 3981805..3982251 (-) 447 WP_001261222.1 YccF domain-containing protein -
  F4V15_RS19295 helD 3982375..3984428 (+) 2054 Protein_3722 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=388624 F4V15_RS19280 WP_001202375.1 3979041..3979646(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Stanley strain AR-0403]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=388624 F4V15_RS19280 WP_001202375.1 3979041..3979646(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Stanley strain AR-0403]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment