Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F4V19_RS03500 Genome accession   NZ_CP044177
Coordinates   738380..738985 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Concord strain AR-0407     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 733380..743985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V19_RS03480 - 733775..735535 (-) 1761 WP_000156448.1 AAA family ATPase -
  F4V19_RS03485 matP 735721..736173 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  F4V19_RS03490 ompA 736245..737297 (-) 1053 WP_001670727.1 porin OmpA -
  F4V19_RS03495 sulA 737654..738163 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  F4V19_RS03500 sxy/tfoX 738380..738985 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  F4V19_RS03505 yccS 738972..741125 (-) 2154 WP_079959530.1 YccS family putative transporter -
  F4V19_RS03510 - 741144..741590 (-) 447 WP_001261222.1 YccF domain-containing protein -
  F4V19_RS03515 helD 741714..743768 (+) 2055 WP_080193326.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=388560 F4V19_RS03500 WP_001202375.1 738380..738985(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Concord strain AR-0407]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=388560 F4V19_RS03500 WP_001202375.1 738380..738985(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Concord strain AR-0407]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTCGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment