Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F4V23_RS00405 Genome accession   NZ_CP044175
Coordinates   89294..90262 (-) Length   322 a.a.
NCBI ID   WP_002780538.1    Uniprot ID   A0A400H2N3
Organism   Campylobacter coli strain AR-0411     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 84294..95262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V23_RS00385 - 85809..86440 (-) 632 Protein_74 hypothetical protein -
  F4V23_RS00390 - 86606..87595 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  F4V23_RS00395 - 87610..88365 (-) 756 WP_151061212.1 ABC transporter ATP-binding protein -
  F4V23_RS00400 - 88362..89258 (-) 897 WP_002780537.1 iron chelate uptake ABC transporter family permease subunit -
  F4V23_RS00405 ceuB 89294..90262 (-) 969 WP_002780538.1 ABC transporter permease Machinery gene
  F4V23_RS00410 - 90395..91288 (-) 894 WP_233347901.1 phospholipase A -
  F4V23_RS00415 - 91387..91962 (-) 576 WP_002810385.1 molybdenum cofactor guanylyltransferase -
  F4V23_RS00420 - 92024..93331 (+) 1308 WP_002823835.1 NFACT family protein -
  F4V23_RS00425 - 93333..93671 (+) 339 WP_002777761.1 hypothetical protein -
  F4V23_RS00430 - 93680..94405 (+) 726 WP_002812238.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35535.38 Da        Isoelectric Point: 9.5069

>NTDB_id=388535 F4V23_RS00405 WP_002780538.1 89294..90262(-) (ceuB) [Campylobacter coli strain AR-0411]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=388535 F4V23_RS00405 WP_002780538.1 89294..90262(-) (ceuB) [Campylobacter coli strain AR-0411]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTA
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A400H2N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.13

100

0.891

Multiple sequence alignment