Detailed information    

insolico Bioinformatically predicted

Overview


Name   Cj0683   Type   Machinery gene
Locus tag   F4V25_RS06700 Genome accession   NZ_CP044171
Coordinates   1202656..1203093 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain AR-0413     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1197656..1208093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V25_RS06680 kdpD 1198144..1200075 (+) 1932 WP_057098404.1 sensor histidine kinase KdpD -
  F4V25_RS06685 uvrB 1200070..1202043 (-) 1974 WP_014516973.1 excinuclease ABC subunit UvrB -
  F4V25_RS06690 - 1202197..1202427 (+) 231 WP_002852327.1 hypothetical protein -
  F4V25_RS06695 - 1202417..1202659 (+) 243 WP_002854947.1 hypothetical protein -
  F4V25_RS06700 Cj0683 1202656..1203093 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  F4V25_RS06705 priA 1203075..1204928 (+) 1854 WP_079744373.1 primosomal protein N' -
  F4V25_RS06710 - 1204921..1205679 (-) 759 WP_002877674.1 CTP:phosphoglutamine cytidylyltransferase -
  F4V25_RS06715 - 1205681..1206283 (-) 603 WP_002877673.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=388528 F4V25_RS06700 WP_002852324.1 1202656..1203093(+) (Cj0683) [Campylobacter jejuni strain AR-0413]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=388528 F4V25_RS06700 WP_002852324.1 1202656..1203093(+) (Cj0683) [Campylobacter jejuni strain AR-0413]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1


Multiple sequence alignment