Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F4V25_RS01555 Genome accession   NZ_CP044171
Coordinates   222304..223272 (+) Length   322 a.a.
NCBI ID   WP_002872671.1    Uniprot ID   Q0P8Q7
Organism   Campylobacter jejuni strain AR-0413     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 217304..228272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V25_RS01530 cdsA 218213..218938 (-) 726 WP_002856027.1 phosphatidate cytidylyltransferase -
  F4V25_RS01535 - 218947..219285 (-) 339 WP_002852397.1 hypothetical protein -
  F4V25_RS01540 - 219287..220594 (-) 1308 WP_038816946.1 NFACT family protein -
  F4V25_RS01545 mobA 220657..221232 (+) 576 WP_002853737.1 molybdenum cofactor guanylyltransferase -
  F4V25_RS01550 pldA 221229..222218 (+) 990 WP_038816947.1 phospholipase A -
  F4V25_RS01555 ceuB 222304..223272 (+) 969 WP_002872671.1 ABC transporter permease Machinery gene
  F4V25_RS01560 ceuC 223265..224203 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  F4V25_RS01565 ceuD 224200..224955 (+) 756 WP_002896069.1 ABC transporter ATP-binding protein -
  F4V25_RS01570 ceuB 224968..225960 (+) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  F4V25_RS01575 - 226116..226337 (+) 222 WP_002866774.1 hypothetical protein -
  F4V25_RS01580 - 226338..226619 (+) 282 WP_002866775.1 type II toxin-antitoxin system RelE/ParE family toxin -
  F4V25_RS01590 - 226981..227535 (-) 555 WP_002882696.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35469.40 Da        Isoelectric Point: 9.6678

>NTDB_id=388512 F4V25_RS01555 WP_002872671.1 222304..223272(+) (ceuB) [Campylobacter jejuni strain AR-0413]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=388512 F4V25_RS01555 WP_002872671.1 222304..223272(+) (ceuB) [Campylobacter jejuni strain AR-0413]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTTACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTCTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991

Multiple sequence alignment