Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   F4V25_RS00570 Genome accession   NZ_CP044171
Coordinates   24804..25754 (+) Length   316 a.a.
NCBI ID   WP_002866164.1    Uniprot ID   Q9ALT6
Organism   Campylobacter jejuni strain AR-0413     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 19804..30754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V25_RS00545 - 20162..21175 (-) 1014 WP_052821868.1 hypothetical protein -
  F4V25_RS00550 - 21246..22019 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  F4V25_RS00555 wlaTB 22012..22968 (+) 957 WP_002869613.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  F4V25_RS00560 wlaTC 22965..23924 (+) 960 WP_012006735.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  F4V25_RS00565 - 23927..24745 (-) 819 WP_002866163.1 glycosyltransferase family 2 protein -
  F4V25_RS00570 waaF 24804..25754 (+) 951 WP_002866164.1 lipopolysaccharide heptosyltransferase II Regulator
  F4V25_RS00575 - 25806..27305 (+) 1500 WP_002877116.1 MBOAT family O-acyltransferase -
  F4V25_RS00580 - 27315..28430 (+) 1116 WP_002877117.1 hypothetical protein -
  F4V25_RS00585 gmhA 28434..28994 (-) 561 WP_002877119.1 D-sedoheptulose 7-phosphate isomerase -
  F4V25_RS00590 rfaE1 28991..30376 (-) 1386 WP_002877121.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36378.95 Da        Isoelectric Point: 10.3102

>NTDB_id=388507 F4V25_RS00570 WP_002866164.1 24804..25754(+) (waaF) [Campylobacter jejuni strain AR-0413]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=388507 F4V25_RS00570 WP_002866164.1 24804..25754(+) (waaF) [Campylobacter jejuni strain AR-0413]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ALT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.249

99.051

0.934

Multiple sequence alignment