Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   F4V26_RS06220 Genome accession   NZ_CP044169
Coordinates   1213729..1214166 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain AR-0414     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1208729..1219166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V26_RS06205 ispG 1209273..1210346 (-) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  F4V26_RS06210 cipA 1210492..1211884 (+) 1393 Protein_1199 DUF2972 domain-containing protein -
  F4V26_RS06215 priA 1211894..1213747 (-) 1854 WP_002860009.1 primosomal protein N' -
  F4V26_RS06220 Cj0683 1213729..1214166 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  F4V26_RS06225 - 1214163..1214405 (-) 243 WP_002854947.1 hypothetical protein -
  F4V26_RS06230 - 1214395..1214625 (-) 231 WP_002852327.1 hypothetical protein -
  F4V26_RS06235 uvrB 1214779..1216752 (+) 1974 WP_002869815.1 excinuclease ABC subunit UvrB -
  F4V26_RS09225 - 1216854..1217180 (-) 327 WP_224328091.1 hypothetical protein -
  F4V26_RS09230 - 1217156..1217272 (-) 117 WP_257406933.1 hypothetical protein -
  F4V26_RS09235 - 1217316..1217504 (-) 189 WP_230099897.1 DUF4118 domain-containing protein -
  F4V26_RS09240 - 1217528..1218677 (-) 1150 Protein_1208 sensor histidine kinase KdpD -
  F4V26_RS09025 - 1218680..1218985 (-) 306 Protein_1209 potassium-transporting ATPase subunit C -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=388501 F4V26_RS06220 WP_002852324.1 1213729..1214166(-) (Cj0683) [Campylobacter jejuni strain AR-0414]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=388501 F4V26_RS06220 WP_002852324.1 1213729..1214166(-) (Cj0683) [Campylobacter jejuni strain AR-0414]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment