Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   F4V26_RS02565 Genome accession   NZ_CP044169
Coordinates   488115..489083 (-) Length   322 a.a.
NCBI ID   WP_002874446.1    Uniprot ID   A0AB36G4C9
Organism   Campylobacter jejuni strain AR-0414     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483115..494083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V26_RS02540 - 484647..485201 (+) 555 WP_002867306.1 membrane protein -
  F4V26_RS02550 ceuB 485427..486419 (-) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  F4V26_RS02555 ceuD 486432..487187 (-) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  F4V26_RS02560 ceuC 487184..488122 (-) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  F4V26_RS02565 ceuB 488115..489083 (-) 969 WP_002874446.1 ABC transporter permease Machinery gene
  F4V26_RS02570 pldA 489169..490158 (-) 990 WP_002864239.1 phospholipase A -
  F4V26_RS02575 mobA 490155..490730 (-) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  F4V26_RS02580 - 490792..492099 (+) 1308 WP_002864240.1 NFACT family protein -
  F4V26_RS02585 - 492101..492439 (+) 339 WP_002852397.1 hypothetical protein -
  F4V26_RS02590 cdsA 492448..493173 (+) 726 WP_002869324.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=388491 F4V26_RS02565 WP_002874446.1 488115..489083(-) (ceuB) [Campylobacter jejuni strain AR-0414]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=388491 F4V26_RS02565 WP_002874446.1 488115..489083(-) (ceuB) [Campylobacter jejuni strain AR-0414]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTGCTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGCATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment