Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   F4V27_RS06920 Genome accession   NZ_CP044167
Coordinates   1338341..1338778 (+) Length   145 a.a.
NCBI ID   WP_004316749.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0415     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1333341..1343778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V27_RS06900 kdpD 1333829..1335760 (+) 1932 WP_057100497.1 sensor histidine kinase KdpD -
  F4V27_RS06905 uvrB 1335755..1337728 (-) 1974 WP_004316755.1 excinuclease ABC subunit UvrB -
  F4V27_RS06910 - 1337882..1338112 (+) 231 WP_002852327.1 hypothetical protein -
  F4V27_RS06915 - 1338102..1338344 (+) 243 WP_002854947.1 hypothetical protein -
  F4V27_RS06920 Cj0683 1338341..1338778 (+) 438 WP_004316749.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  F4V27_RS06925 priA 1338760..1340613 (+) 1854 WP_150968567.1 primosomal protein N' -
  F4V27_RS06930 cipA 1340623..1342017 (-) 1395 WP_057100498.1 DUF2972 domain-containing protein -
  F4V27_RS06935 ispG 1342163..1343236 (+) 1074 WP_004316745.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16739.68 Da        Isoelectric Point: 8.0993

>NTDB_id=388480 F4V27_RS06920 WP_004316749.1 1338341..1338778(+) (Cj0683) [Campylobacter jejuni strain AR-0415]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCSNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=388480 F4V27_RS06920 WP_004316749.1 1338341..1338778(+) (Cj0683) [Campylobacter jejuni strain AR-0415]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTCAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment