Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | HIN88_RS03035 | Genome accession | NZ_CP051866 |
| Coordinates | 629816..630331 (-) | Length | 171 a.a. |
| NCBI ID | WP_000477151.1 | Uniprot ID | V5VA61 |
| Organism | Acinetobacter baumannii strain Ab-C63 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 624816..635331
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HIN88_RS03010 (HIN88_03010) | - | 625362..627005 (+) | 1644 | WP_000281764.1 | nitrite/sulfite reductase | - |
| HIN88_RS03015 (HIN88_03015) | - | 626998..627483 (+) | 486 | WP_064193002.1 | DUF934 domain-containing protein | - |
| HIN88_RS03020 (HIN88_03020) | - | 627566..627919 (+) | 354 | WP_064193003.1 | DMT family transporter | - |
| HIN88_RS03025 (HIN88_03025) | - | 627962..628405 (-) | 444 | WP_001176580.1 | VOC family protein | - |
| HIN88_RS03030 (HIN88_03030) | - | 628532..629707 (-) | 1176 | WP_064193004.1 | thiolase family protein | - |
| HIN88_RS03035 (HIN88_03035) | fimT | 629816..630331 (-) | 516 | WP_000477151.1 | GspH/FimT family pseudopilin | Machinery gene |
| HIN88_RS03040 (HIN88_03040) | omp38 | 630713..631744 (+) | 1032 | WP_005109473.1 | outer membrane protein Omp38 | - |
| HIN88_RS03045 (HIN88_03045) | - | 631869..632012 (-) | 144 | WP_162138624.1 | hypothetical protein | - |
| HIN88_RS03050 (HIN88_03050) | - | 632031..633236 (-) | 1206 | WP_000512701.1 | RtcB family protein | - |
| HIN88_RS03055 (HIN88_03055) | - | 633512..634972 (-) | 1461 | WP_002157309.1 | amino acid permease | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19606.86 Da Isoelectric Point: 8.8196
>NTDB_id=388473 HIN88_RS03035 WP_000477151.1 629816..630331(-) (fimT) [Acinetobacter baumannii strain Ab-C63]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=388473 HIN88_RS03035 WP_000477151.1 629816..630331(-) (fimT) [Acinetobacter baumannii strain Ab-C63]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |