Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   F4V31_RS08160 Genome accession   NZ_CP044162
Coordinates   1563429..1564160 (+) Length   243 a.a.
NCBI ID   WP_002858388.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0419     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558429..1569160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V31_RS08130 rpsF 1558571..1558948 (+) 378 WP_002865739.1 30S ribosomal protein S6 -
  F4V31_RS08135 ssb 1558957..1559508 (+) 552 WP_002865738.1 single-stranded DNA-binding protein -
  F4V31_RS08140 rpsR 1559519..1559779 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  F4V31_RS08145 lon 1559840..1562215 (-) 2376 WP_002868636.1 endopeptidase La -
  F4V31_RS08150 - 1562232..1562879 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  F4V31_RS08155 fliW 1563040..1563429 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  F4V31_RS08160 proC 1563429..1564160 (+) 732 WP_002858388.1 pyrroline-5-carboxylate reductase Machinery gene
  F4V31_RS08165 ctsT 1564157..1564459 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  F4V31_RS08170 - 1564456..1565118 (+) 663 WP_002858296.1 hypothetical protein -
  F4V31_RS08175 - 1565115..1565567 (+) 453 WP_002859148.1 hypothetical protein -
  F4V31_RS08180 hemD 1565564..1566193 (-) 630 WP_002858312.1 uroporphyrinogen-III synthase -
  F4V31_RS08185 thiE 1566171..1566803 (-) 633 WP_002858441.1 thiamine phosphate synthase -
  F4V31_RS08190 thiD 1566793..1567605 (-) 813 WP_002858043.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  F4V31_RS08195 - 1567602..1568288 (-) 687 WP_002858132.1 endonuclease III domain-containing protein -
  F4V31_RS08200 - 1568285..1569046 (-) 762 WP_002852748.1 ATP-binding protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26586.98 Da        Isoelectric Point: 8.5934

>NTDB_id=388449 F4V31_RS08160 WP_002858388.1 1563429..1564160(+) (proC) [Campylobacter jejuni strain AR-0419]
MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKTLLYKDFNIEGKDVILAFKPYALENIAQMLKGQARIL
ISVLANVDFEKLQTIKAQNYVRIIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSNALLEHEHPAIIKENICSPGGVTIKGIKILEQKGIRGSFFEAINAS
SAK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=388449 F4V31_RS08160 WP_002858388.1 1563429..1564160(+) (proC) [Campylobacter jejuni strain AR-0419]
ATGCTCTATATACTTGCAAATGGATCTATGGCAACAGCCTTAGCCTATGGGTTAAAAGATGATTATGAAATTTGTATAGT
AGGAAGAAGTATAGAAAAACTTCAAGCCCTCGCCAAAGAAGGCTTTAAAACCTTACTTTACAAAGATTTTAACATAGAAG
GTAAAGATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAAATATTGCTCAAATGCTAAAAGGACAAGCACGTATCTTA
ATCTCTGTTTTAGCCAATGTTGATTTTGAAAAACTACAAACCATCAAAGCTCAAAATTATGTTAGAATAATACCCAATAC
AGCAGCTAAATACAAGGCTTCAACCACACCATATATACTTAAAAACTCTCATTTTGAAAATGAAATTTTAGACATTTTAA
AAACTTTTGGCTCGGCTTATAAATTAGATAATGAAATACAAATGAATGCAGCTATGGCGATTAGCGGCTGCGCTCCTGCT
TTTTTAGCACTTATAGCAGAAAGCATTGCTAATGCTGGAGTTTATGAAGGTTTGTCAAAAGAACTTAGTCTCAATCTTAC
GCGCTCTTTATTTAAAAGCTCTAATGCTTTACTAGAACATGAACATCCAGCTATTATCAAAGAAAATATTTGCTCCCCTG
GCGGAGTTACAATAAAAGGCATAAAAATACTCGAACAAAAAGGAATTCGCGGAAGTTTTTTTGAAGCCATAAATGCTAGC
AGCGCTAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-242)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

99.177

100

0.992

Multiple sequence alignment