Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   F4V31_RS06250 Genome accession   NZ_CP044162
Coordinates   1182103..1182540 (+) Length   145 a.a.
NCBI ID   WP_002927921.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AR-0419     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1177103..1187540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V31_RS06230 kdpD 1177591..1179522 (+) 1932 WP_002927928.1 sensor histidine kinase KdpD -
  F4V31_RS06235 uvrB 1179517..1181490 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  F4V31_RS06240 - 1181644..1181874 (+) 231 WP_002852327.1 hypothetical protein -
  F4V31_RS06245 - 1181864..1182106 (+) 243 WP_002927925.1 hypothetical protein -
  F4V31_RS06250 Cj0683 1182103..1182540 (+) 438 WP_002927921.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  F4V31_RS06255 priA 1182522..1184375 (+) 1854 WP_002927918.1 primosomal protein N' -
  F4V31_RS06260 cipA 1184385..1185779 (-) 1395 WP_038401184.1 DUF2972 domain-containing protein -
  F4V31_RS06265 ispG 1185925..1186998 (+) 1074 WP_052821906.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16784.81 Da        Isoelectric Point: 8.4560

>NTDB_id=388447 F4V31_RS06250 WP_002927921.1 1182103..1182540(+) (Cj0683) [Campylobacter jejuni strain AR-0419]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNRYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=388447 F4V31_RS06250 WP_002927921.1 1182103..1182540(+) (Cj0683) [Campylobacter jejuni strain AR-0419]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCGCTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993

Multiple sequence alignment