Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   HMPREF0421_RS06615 Genome accession   NC_014644
Coordinates   1661808..1662509 (+) Length   233 a.a.
NCBI ID   WP_009994318.1    Uniprot ID   -
Organism   Gardnerella vaginalis ATCC 14019     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656808..1667509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF0421_RS06590 (HMPREF0421_21358) - 1656919..1658655 (-) 1737 WP_009994324.1 FTR1 family protein -
  HMPREF0421_RS06595 (HMPREF0421_21359) - 1658902..1659162 (-) 261 WP_116285252.1 hypothetical protein -
  HMPREF0421_RS06600 (HMPREF0421_21361) - 1659404..1660168 (-) 765 WP_004114222.1 ABC transporter permease -
  HMPREF0421_RS06605 (HMPREF0421_21362) - 1660182..1660907 (-) 726 WP_009994320.1 ABC transporter permease -
  HMPREF0421_RS06610 (HMPREF0421_21363) - 1660904..1661668 (-) 765 WP_004138603.1 ABC transporter ATP-binding protein -
  HMPREF0421_RS06615 (HMPREF0421_21364) scnR 1661808..1662509 (+) 702 WP_009994318.1 response regulator transcription factor Regulator
  HMPREF0421_RS06620 (HMPREF0421_21365) - 1662516..1663925 (+) 1410 WP_013399787.1 ATP-binding protein -
  HMPREF0421_RS06625 (HMPREF0421_21367) - 1664243..1665283 (-) 1041 WP_009994313.1 FAD:protein FMN transferase -
  HMPREF0421_RS06630 (HMPREF0421_21368) - 1665307..1666557 (-) 1251 WP_004138600.1 Fic family protein -
  HMPREF0421_RS06635 (HMPREF0421_21369) - 1666989..1667162 (+) 174 Protein_1271 ATPase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26456.61 Da        Isoelectric Point: 4.8694

>NTDB_id=38843 HMPREF0421_RS06615 WP_009994318.1 1661808..1662509(+) (scnR) [Gardnerella vaginalis ATCC 14019]
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIQLT
AKEYDLLSALYRNAGCIVTIDALCEATWGANPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=38843 HMPREF0421_RS06615 WP_009994318.1 1661808..1662509(+) (scnR) [Gardnerella vaginalis ATCC 14019]
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGATGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAGTTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCCTCTGCCCAAGTAATAAAAAATAACGAACATATTCAACTCACA
GCCAAAGAATATGATTTACTTTCTGCACTTTATAGAAATGCTGGATGCATTGTAACAATTGACGCATTATGTGAAGCTAC
ATGGGGAGCTAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATAAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.915

95.708

0.506

Multiple sequence alignment