Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   F4V32_RS07865 Genome accession   NZ_CP044161
Coordinates   1507145..1508326 (+) Length   393 a.a.
NCBI ID   WP_150966488.1    Uniprot ID   -
Organism   Campylobacter coli strain AR-0420     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502145..1513326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V32_RS07850 cysC 1502820..1503404 (+) 585 WP_002834054.1 adenylyl-sulfate kinase -
  F4V32_RS09080 - 1503401..1505062 (+) 1662 WP_191904566.1 hypothetical protein -
  F4V32_RS07860 - 1505121..1507148 (+) 2028 WP_150966486.1 capsular polysaccharide biosynthesis protein -
  F4V32_RS07865 kpsS 1507145..1508326 (+) 1182 WP_150966488.1 capsule biosynthesis protein Regulator
  F4V32_RS07870 - 1508398..1509519 (+) 1122 WP_002805170.1 hypothetical protein -
  F4V32_RS07875 - 1509516..1510886 (+) 1371 WP_002783822.1 cytochrome P450 -
  F4V32_RS07880 - 1510883..1511305 (+) 423 WP_002779166.1 hypothetical protein -
  F4V32_RS07885 acpS 1511308..1511655 (-) 348 WP_002779165.1 holo-ACP synthase -
  F4V32_RS07890 fliL 1511655..1512191 (-) 537 WP_002798779.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46465.18 Da        Isoelectric Point: 10.0094

>NTDB_id=388422 F4V32_RS07865 WP_150966488.1 1507145..1508326(+) (kpsS) [Campylobacter coli strain AR-0420]
MKFRDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKGLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPSLVINFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=388422 F4V32_RS07865 WP_150966488.1 1507145..1508326(+) (kpsS) [Campylobacter coli strain AR-0420]
ATGAAATTTAGAGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTATGAGAACTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGGGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCTTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CCTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTACAGCCTTGAAAAAAAGTACTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTCTATGTACATGATACTTATTTGCCTACTCTTTTAAAAAATGCTTTAGGTTGTATTACGATCAATTCT
ACAGTAGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCAAAAAAACTTCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTATAAATTTTAAAA
ATTATCTTTTAAATACAAATCAGTTCAATGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.5

99.746

0.873

Multiple sequence alignment