Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HIN89_RS07630 Genome accession   NZ_CP051862
Coordinates   1617998..1618633 (+) Length   211 a.a.
NCBI ID   WP_004835307.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-C102     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1612998..1623633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN89_RS07605 (HIN89_07605) - 1613838..1614851 (+) 1014 WP_002125078.1 aminoglycoside phosphotransferase family protein -
  HIN89_RS07610 (HIN89_07610) murU 1614851..1615540 (+) 690 WP_038341982.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  HIN89_RS07615 (HIN89_07615) rsmG 1615628..1616260 (+) 633 WP_169040960.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HIN89_RS07620 (HIN89_07620) - 1616282..1617064 (+) 783 WP_000057212.1 ParA family protein -
  HIN89_RS07625 (HIN89_07625) - 1617061..1617948 (+) 888 WP_004835309.1 ParB/RepB/Spo0J family partition protein -
  HIN89_RS07630 (HIN89_07630) exbB 1617998..1618633 (+) 636 WP_004835307.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HIN89_RS07635 (HIN89_07635) - 1618649..1619077 (+) 429 WP_169040961.1 ExbD/TolR family protein -
  HIN89_RS07640 (HIN89_07640) msbA 1619074..1620801 (+) 1728 WP_004835304.1 lipid A export permease/ATP-binding protein MsbA -
  HIN89_RS07645 (HIN89_07645) lpxK 1620804..1621814 (+) 1011 WP_038341979.1 tetraacyldisaccharide 4'-kinase -
  HIN89_RS07650 (HIN89_07650) kdsB 1621824..1622585 (+) 762 WP_004835301.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HIN89_RS07655 (HIN89_07655) - 1622597..1623577 (+) 981 WP_004835299.1 DNA polymerase III, delta' subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23210.15 Da        Isoelectric Point: 6.4861

>NTDB_id=388408 HIN89_RS07630 WP_004835307.1 1617998..1618633(+) (exbB) [Acinetobacter baumannii strain Ab-C102]
MWELVKAGGWLMLPLILCSILIVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=388408 HIN89_RS07630 WP_004835307.1 1617998..1618633(+) (exbB) [Acinetobacter baumannii strain Ab-C102]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAATCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCGCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTCATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393