Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   F4V32_RS00725 Genome accession   NZ_CP044161
Coordinates   139890..140627 (-) Length   245 a.a.
NCBI ID   WP_002780246.1    Uniprot ID   A0A5T1L8T6
Organism   Campylobacter coli strain AR-0420     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134890..145627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V32_RS00685 - 135003..135764 (+) 762 WP_072212081.1 ATP-binding protein -
  F4V32_RS00690 - 135761..136444 (+) 684 WP_150966194.1 3-methyladenine DNA glycosylase -
  F4V32_RS00695 thiD 136444..137256 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  F4V32_RS00700 thiE 137246..137878 (+) 633 WP_002777120.1 thiamine phosphate synthase -
  F4V32_RS00705 - 137856..138485 (+) 630 WP_002777119.1 uroporphyrinogen-III synthase -
  F4V32_RS00710 - 138478..138930 (-) 453 WP_150966196.1 hypothetical protein -
  F4V32_RS00715 - 138927..139595 (-) 669 WP_052780494.1 hypothetical protein -
  F4V32_RS00720 ctsT 139588..139893 (-) 306 WP_002777852.1 hypothetical protein Machinery gene
  F4V32_RS00725 proC 139890..140627 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  F4V32_RS00730 fliW 140627..141016 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  F4V32_RS00735 - 141180..141827 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  F4V32_RS00740 lon 141843..144218 (+) 2376 WP_002783351.1 endopeptidase La -
  F4V32_RS00745 rpsR 144274..144534 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  F4V32_RS00750 - 144545..145093 (-) 549 WP_002777084.1 single-stranded DNA-binding protein -
  F4V32_RS00755 rpsF 145102..145479 (-) 378 WP_002777082.1 30S ribosomal protein S6 -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 26797.20 Da        Isoelectric Point: 9.3032

>NTDB_id=388407 F4V32_RS00725 WP_002780246.1 139890..140627(-) (proC) [Campylobacter coli strain AR-0420]
MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEGFKTLLYKDFNIENKNIILAFKPYALESVAANLKGKA
KILISVLANTDFDKLKLIQAQNYARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
APAFLALVAESIANAGVYEGLSKELSLNLTRSLFKSAAALLENEHPAIIKENICSPAGVTIKGIKVLEQKGIRGTFFEAL
NASAT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=388407 F4V32_RS00725 WP_002780246.1 139890..140627(-) (proC) [Campylobacter coli strain AR-0420]
ATGAAAGCTGATTTATATATACTTGCTAATGGTGCGATGGCGCAAGCTTTGGCTTATGGATTAAAAGATTCTTATAATAT
CTATATAGTCGGTAGAAATTTAGAAAAGCTTCAAATTTTAGAAAAAGAAGGTTTTAAAACTTTACTCTATAAAGATTTTA
ATATAGAAAATAAAAATATTATCTTAGCTTTTAAACCTTATGCCTTAGAAAGTGTCGCAGCAAATTTAAAAGGCAAGGCA
AAAATTTTAATTTCAGTTTTAGCCAATACGGATTTTGATAAATTAAAACTTATCCAAGCCCAAAATTATGCAAGGATAAT
GCCAAATACAGCAGCTAAATATAAAGCTTCCACAACTCCTTATGTTTTAAAAAATTCAAATTTTAAAGATGAAGTCATAG
AAATTTTAAATACTTTTGGCAAAGCTTATGAGTTAAACGAAGAAAAACAAATGAATGCTGCCATGGCTATAAGCGGTTGC
GCTCCTGCTTTTTTAGCATTAGTAGCTGAAAGCATTGCTAATGCTGGCGTGTATGAAGGATTATCAAAAGAGCTGAGTTT
AAATCTCACTCGTTCGCTTTTTAAAAGTGCTGCAGCCTTGCTAGAAAACGAGCACCCAGCCATCATTAAGGAAAATATCT
GCTCGCCTGCAGGTGTTACCATAAAAGGGATTAAAGTATTAGAGCAAAAAGGTATCCGTGGGACTTTTTTTGAGGCTCTT
AATGCTAGTGCAACATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(7-88)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(148-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1L8T6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

80.833

97.959

0.792

Multiple sequence alignment