Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | F4V32_RS00370 | Genome accession | NZ_CP044161 |
| Coordinates | 69871..70830 (-) | Length | 319 a.a. |
| NCBI ID | WP_052791764.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain AR-0420 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 64871..75830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V32_RS00340 | - | 65836..66036 (+) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| F4V32_RS00345 | - | 66066..66365 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| F4V32_RS00350 | - | 66442..67005 (+) | 564 | WP_150966179.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| F4V32_RS00355 | rfaD | 67002..67955 (+) | 954 | WP_150966181.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| F4V32_RS00360 | rfaE1 | 67948..69333 (+) | 1386 | WP_058914606.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| F4V32_RS00365 | gmhA | 69330..69890 (+) | 561 | WP_052780515.1 | D-sedoheptulose 7-phosphate isomerase | - |
| F4V32_RS00370 | waaF | 69871..70830 (-) | 960 | WP_052791764.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| F4V32_RS00375 | - | 70889..71707 (+) | 819 | WP_052780513.1 | glycosyltransferase family 2 protein | - |
| F4V32_RS00380 | - | 71719..72846 (+) | 1128 | WP_002780621.1 | polysaccharide pyruvyl transferase family protein | - |
| F4V32_RS00390 | - | 73333..73659 (+) | 327 | WP_173777375.1 | hypothetical protein | - |
| F4V32_RS09285 | - | 73686..73874 (+) | 189 | WP_032682936.1 | sulfatase-like hydrolase/transferase | - |
| F4V32_RS00400 | - | 73879..74655 (+) | 777 | WP_050456352.1 | sulfatase-like hydrolase/transferase | - |
| F4V32_RS00405 | - | 74758..74970 (+) | 213 | WP_216593417.1 | hypothetical protein | - |
| F4V32_RS09290 | - | 75210..75344 (+) | 135 | WP_002780627.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36659.31 Da Isoelectric Point: 10.3838
>NTDB_id=388404 F4V32_RS00370 WP_052791764.1 69871..70830(-) (waaF) [Campylobacter coli strain AR-0420]
MKIFIHLPTWLGDAVMASSALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIIENKKSRYKQALSLRKKLGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIILKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHKLKEKNVKVKNLCNKTTIKMLCQNIAICDIFITNDS
GPMHIAAAYKTKTVAIFGPTKFTQTSPWQNQNAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASSALYGVYHHFKNAEFILYGSFVSTALFKEFPNAKIIIENKKSRYKQALSLRKKLGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIILKNGKKILGLNPGA
SFGSAKRWDASYFAQVALNFSKTHEILIFGAGKAEQELCDEIFHKLKEKNVKVKNLCNKTTIKMLCQNIAICDIFITNDS
GPMHIAAAYKTKTVAIFGPTKFTQTSPWQNQNAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=388404 F4V32_RS00370 WP_052791764.1 69871..70830(-) (waaF) [Campylobacter coli strain AR-0420]
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCGGTTATGGCTTCATCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACGGCACTTTTTAAAGAATTTCCTAATGCTAAAATCA
TTATAGAAAATAAAAAATCACGCTACAAGCAAGCCCTCTCTTTGCGTAAAAAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTATTTTAAAAAATGGTAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGCAAGGCAGAACAAGAACTCTGCGATGAAATTTTTCATAAATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACTATCAAAATGCTTTGTCAAAATATCGCAATTTGTGATATTTTCATCACAAATGATAGC
GGTCCTATGCACATAGCTGCCGCTTATAAAACAAAAACTGTGGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
ATGAAAATTTTTATCCATCTTCCCACTTGGCTAGGCGATGCGGTTATGGCTTCATCTGCTTTATATGGAGTTTATCATCA
TTTTAAAAATGCTGAATTTATCCTTTATGGATCTTTTGTATCTACGGCACTTTTTAAAGAATTTCCTAATGCTAAAATCA
TTATAGAAAATAAAAAATCACGCTACAAGCAAGCCCTCTCTTTGCGTAAAAAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAGGTTTTAAAATATCTTTATTTTATAGAAAATTCACTAGATATTAAAGCTCATTCTAAGGATTTAA
AACTTCCTTTTAAATTAAAATTTCAAAATCCTATTATTTTAAAAAATGGTAAAAAAATCCTAGGCTTAAATCCTGGAGCA
AGTTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCACAAGTTGCTTTAAATTTTAGCAAAACTCATGAAATTTT
GATTTTTGGAGCAGGCAAGGCAGAACAAGAACTCTGCGATGAAATTTTTCATAAATTAAAAGAAAAAAATGTCAAGGTAA
AAAATCTTTGCAATAAAACCACTATCAAAATGCTTTGTCAAAATATCGCAATTTGTGATATTTTCATCACAAATGATAGC
GGTCCTATGCACATAGCTGCCGCTTATAAAACAAAAACTGTGGCTATCTTTGGGCCTACTAAATTTACCCAAACCTCACC
TTGGCAAAATCAAAATGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
87.461 |
100 |
0.875 |