Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F4V39_RS24480 Genome accession   NZ_CP044148
Coordinates   4904028..4904657 (+) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli O157 strain AR-0427     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4899028..4909657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V39_RS24460 ycbZ 4899430..4901190 (-) 1761 WP_000156526.1 Lon protease family protein -
  F4V39_RS24465 matP 4901376..4901828 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  F4V39_RS24470 ompA 4901903..4902943 (-) 1041 WP_000750416.1 porin OmpA -
  F4V39_RS24475 sulA 4903300..4903809 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  F4V39_RS24480 sxy/tfoX 4904028..4904657 (+) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  F4V39_RS24485 yccS 4904620..4906782 (-) 2163 WP_000875023.1 YccS family putative transporter -
  F4V39_RS24490 yccF 4906792..4907238 (-) 447 WP_001261230.1 YccF domain-containing protein -
  F4V39_RS24495 helD 4907361..4909415 (+) 2055 WP_001301436.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=388319 F4V39_RS24480 WP_000839159.1 4904028..4904657(+) (sxy/tfoX) [Escherichia coli O157 strain AR-0427]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=388319 F4V39_RS24480 WP_000839159.1 4904028..4904657(+) (sxy/tfoX) [Escherichia coli O157 strain AR-0427]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTCGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment