Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F4V40_RS04080 Genome accession   NZ_CP044145
Coordinates   860567..861196 (+) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli O157 strain AR-0428     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 855567..866196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V40_RS04060 ycbZ 855968..857728 (-) 1761 WP_000156526.1 Lon protease family protein -
  F4V40_RS04065 matP 857914..858366 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  F4V40_RS04070 ompA 858442..859482 (-) 1041 WP_000750416.1 porin OmpA -
  F4V40_RS04075 sulA 859839..860348 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  F4V40_RS04080 sxy/tfoX 860567..861196 (+) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  F4V40_RS04085 yccS 861159..863321 (-) 2163 WP_000875023.1 YccS family putative transporter -
  F4V40_RS04090 yccF 863331..863777 (-) 447 WP_001261230.1 YccF domain-containing protein -
  F4V40_RS04095 helD 863900..865954 (+) 2055 WP_001301436.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=388276 F4V40_RS04080 WP_000839159.1 860567..861196(+) (sxy/tfoX) [Escherichia coli O157 strain AR-0428]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=388276 F4V40_RS04080 WP_000839159.1 860567..861196(+) (sxy/tfoX) [Escherichia coli O157 strain AR-0428]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment