Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   F3129_RS17190 Genome accession   NZ_CP044133
Coordinates   3462168..3463331 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain FJAT-46737     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3457168..3468331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3129_RS17160 (F3129_17160) - 3457432..3457851 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  F3129_RS17165 (F3129_17165) comFC 3457925..3458614 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  F3129_RS17170 (F3129_17170) - 3458620..3458904 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  F3129_RS17175 (F3129_17175) comFA 3458962..3460347 (-) 1386 WP_150941463.1 DEAD/DEAH box helicase Machinery gene
  F3129_RS17180 (F3129_17180) - 3460456..3461304 (-) 849 WP_003151387.1 DegV family protein -
  F3129_RS17185 (F3129_17185) degU 3461402..3462091 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  F3129_RS17190 (F3129_17190) degS 3462168..3463331 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  F3129_RS17195 (F3129_17195) - 3463554..3464201 (+) 648 WP_007407485.1 YigZ family protein -
  F3129_RS17200 (F3129_17200) - 3464206..3465426 (+) 1221 WP_061581227.1 LCP family protein -
  F3129_RS17205 (F3129_17205) - 3465525..3466601 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  F3129_RS17210 (F3129_17210) tuaH 3466734..3467930 (-) 1197 WP_150941464.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=388201 F3129_RS17190 WP_007407484.1 3462168..3463331(-) (degS) [Bacillus velezensis strain FJAT-46737]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=388201 F3129_RS17190 WP_007407484.1 3462168..3463331(-) (degS) [Bacillus velezensis strain FJAT-46737]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGGAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment