Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   F3129_RS13310 Genome accession   NZ_CP044133
Coordinates   2720379..2721131 (-) Length   250 a.a.
NCBI ID   WP_150941335.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-46737     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2715379..2726131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3129_RS13285 (F3129_13285) mreC 2715815..2716678 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  F3129_RS13290 (F3129_13290) mreB 2716709..2717722 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  F3129_RS13295 (F3129_13295) radC 2717814..2718509 (-) 696 WP_007408165.1 DNA repair protein RadC -
  F3129_RS13300 (F3129_13300) - 2718541..2719110 (-) 570 WP_150941334.1 nucleoside triphosphate pyrophosphatase -
  F3129_RS13305 (F3129_13305) - 2719251..2720252 (-) 1002 WP_012118106.1 SPOR domain-containing protein -
  F3129_RS13310 (F3129_13310) comC 2720379..2721131 (-) 753 WP_150941335.1 A24 family peptidase Machinery gene
  F3129_RS13315 (F3129_13315) - 2721271..2722563 (-) 1293 WP_150941336.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  F3129_RS13320 (F3129_13320) - 2722622..2725264 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  F3129_RS13325 (F3129_13325) - 2725717..2725908 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27249.96 Da        Isoelectric Point: 9.4293

>NTDB_id=388188 F3129_RS13310 WP_150941335.1 2720379..2721131(-) (comC) [Bacillus velezensis strain FJAT-46737]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPTAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=388188 F3129_RS13310 WP_150941335.1 2720379..2721131(-) (comC) [Bacillus velezensis strain FJAT-46737]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGACGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment