Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   F3129_RS10915 Genome accession   NZ_CP044133
Coordinates   2239516..2240124 (+) Length   202 a.a.
NCBI ID   WP_094031925.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-46737     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2234516..2245124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3129_RS10875 (F3129_10875) - 2235536..2236042 (-) 507 WP_072589329.1 PTS glucose transporter subunit IIA -
  F3129_RS10880 (F3129_10880) - 2236181..2236594 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  F3129_RS10885 (F3129_10885) - 2236624..2237091 (-) 468 WP_150941282.1 YppG family protein -
  F3129_RS10890 (F3129_10890) - 2237278..2237460 (+) 183 WP_003153532.1 YppF family protein -
  F3129_RS10895 (F3129_10895) - 2237499..2237867 (-) 369 WP_072589331.1 YppE family protein -
  F3129_RS10900 (F3129_10900) - 2237913..2238158 (-) 246 WP_150941283.1 DUF5446 family protein -
  F3129_RS10905 (F3129_10905) sspM 2238364..2238468 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  F3129_RS10910 (F3129_10910) - 2238512..2239474 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  F3129_RS10915 (F3129_10915) recU 2239516..2240124 (+) 609 WP_094031925.1 Holliday junction resolvase RecU Machinery gene
  F3129_RS10920 (F3129_10920) - 2240163..2242946 (+) 2784 WP_150941284.1 PBP1A family penicillin-binding protein -
  F3129_RS10925 (F3129_10925) - 2243024..2243515 (-) 492 WP_032870046.1 YpoC family protein -
  F3129_RS10930 (F3129_10930) nth 2243512..2244171 (-) 660 WP_007612187.1 endonuclease III -
  F3129_RS10935 (F3129_10935) dnaD 2244190..2244888 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.77 Da        Isoelectric Point: 9.5849

>NTDB_id=388171 F3129_RS10915 WP_094031925.1 2239516..2240124(+) (recU) [Bacillus velezensis strain FJAT-46737]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRRDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=388171 F3129_RS10915 WP_094031925.1 2239516..2240124(+) (recU) [Bacillus velezensis strain FJAT-46737]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAGAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886

Multiple sequence alignment