Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   F3129_RS09185 Genome accession   NZ_CP044133
Coordinates   1865059..1865493 (+) Length   144 a.a.
NCBI ID   WP_150941224.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-46737     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1866419..1867569 1865059..1865493 flank 926


Gene organization within MGE regions


Location: 1865059..1867569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3129_RS09185 (F3129_09185) nucA/comI 1865059..1865493 (+) 435 WP_150941224.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  F3129_RS09190 (F3129_09190) - 1865553..1866308 (+) 756 WP_072589115.1 YoaK family protein -
  F3129_RS09195 (F3129_09195) - 1866419..1867569 (+) 1151 WP_150123245.1 IS3 family transposase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15488.36 Da        Isoelectric Point: 7.2418

>NTDB_id=388170 F3129_RS09185 WP_150941224.1 1865059..1865493(+) (nucA/comI) [Bacillus velezensis strain FJAT-46737]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESSKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=388170 F3129_RS09185 WP_150941224.1 1865059..1865493(+) (nucA/comI) [Bacillus velezensis strain FJAT-46737]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCAGAGAATAGAAGGAAA
GAATCATCGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486

Multiple sequence alignment