Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   F3129_RS08630 Genome accession   NZ_CP044133
Coordinates   1689893..1690792 (+) Length   299 a.a.
NCBI ID   WP_150941213.1    Uniprot ID   -
Organism   Bacillus velezensis strain FJAT-46737     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1684893..1695792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3129_RS08610 (F3129_08610) - 1685583..1687286 (+) 1704 WP_150941212.1 glycosyl transferase -
  F3129_RS08615 (F3129_08615) - 1687283..1687564 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  F3129_RS08620 (F3129_08620) sucC 1687739..1688896 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  F3129_RS08625 (F3129_08625) sucD 1688925..1689827 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  F3129_RS08630 (F3129_08630) dprA 1689893..1690792 (+) 900 WP_150941213.1 DNA-processing protein DprA Machinery gene
  F3129_RS08635 (F3129_08635) topA 1690974..1693049 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  F3129_RS08640 (F3129_08640) trmFO 1693114..1694421 (+) 1308 WP_150941214.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  F3129_RS08645 (F3129_08645) xerC 1694491..1695408 (+) 918 WP_150941215.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32886.08 Da        Isoelectric Point: 8.7420

>NTDB_id=388166 F3129_RS08630 WP_150941213.1 1689893..1690792(+) (dprA) [Bacillus velezensis strain FJAT-46737]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKNSELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWIIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAERHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=388166 F3129_RS08630 WP_150941213.1 1689893..1690792(+) (dprA) [Bacillus velezensis strain FJAT-46737]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGAATTCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGATCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTGGCAGAATACATGGCTGAACGCCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCGTTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

69.9

100

0.699
  dprA Lactococcus lactis subsp. cremoris KW2

42.045

88.294

0.371

Multiple sequence alignment