Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ20_RS10370 Genome accession   NZ_CP051849
Coordinates   2148875..2150302 (-) Length   475 a.a.
NCBI ID   WP_001560603.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-101     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2143875..2155302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ20_RS10340 (HHJ20_10340) yeeZ 2143930..2144754 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HHJ20_RS10345 (HHJ20_10345) yeeY 2144800..2145729 (+) 930 WP_023565113.1 LysR substrate-binding domain-containing protein -
  HHJ20_RS10350 (HHJ20_10350) yoeI 2145944..2146006 (+) 63 WP_097433929.1 membrane protein YoeI -
  HHJ20_RS10355 (HHJ20_10355) plaP 2145996..2147354 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ20_RS10360 (HHJ20_10360) tsuA 2147533..2148591 (+) 1059 WP_024189617.1 thiosulfate utilization transporter TsuA/YeeE -
  HHJ20_RS10365 (HHJ20_10365) tsuB 2148605..2148832 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HHJ20_RS10370 (HHJ20_10370) sbcB 2148875..2150302 (-) 1428 WP_001560603.1 exodeoxyribonuclease I Machinery gene
  HHJ20_RS10375 (HHJ20_10375) dacD 2150511..2151677 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ20_RS10380 (HHJ20_10380) sbmC 2151796..2152269 (+) 474 WP_001560602.1 DNA gyrase inhibitor SbmC -
  HHJ20_RS10385 (HHJ20_10385) yeeA 2152467..2153525 (+) 1059 WP_001560601.1 FUSC family protein -
  HHJ20_RS10390 (HHJ20_10390) tmaR 2153697..2154026 (+) 330 WP_000450409.1 DUF496 family protein -
  HHJ20_RS26480 (HHJ20_10395) - 2154127..2154309 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HHJ20_RS26670 (HHJ20_10400) - 2154372..2154509 (+) 138 Protein_2066 transposase domain-containing protein -
  HHJ20_RS10405 (HHJ20_10405) - 2154798..2154890 (-) 93 Protein_2067 DUF957 domain-containing protein -
  HHJ20_RS10410 (HHJ20_10410) yeeW 2154924..2155118 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54538.91 Da        Isoelectric Point: 5.4736

>NTDB_id=388166 HHJ20_RS10370 WP_001560603.1 2148875..2150302(-) (sbcB) [Escherichia coli strain SCU-101]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=388166 HHJ20_RS10370 WP_001560603.1 2148875..2150302(-) (sbcB) [Escherichia coli strain SCU-101]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCGGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAATGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATATCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGTTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585

Multiple sequence alignment