Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BATR1942_RS19695 Genome accession   NC_014639
Coordinates   4005499..4005936 (-) Length   145 a.a.
NCBI ID   WP_003328076.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4000499..4010936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS19660 (BATR1942_20360) - 4001073..4001528 (+) 456 WP_013390750.1 RDD family protein -
  BATR1942_RS19665 (BATR1942_20365) - 4001613..4001942 (+) 330 WP_003328069.1 YckD family protein -
  BATR1942_RS19670 (BATR1942_20370) - 4002046..4002471 (+) 426 WP_003328070.1 MarR family winged helix-turn-helix transcriptional regulator -
  BATR1942_RS19675 (BATR1942_20375) - 4002459..4002800 (+) 342 WP_013390751.1 DUF3147 family protein -
  BATR1942_RS19680 (BATR1942_20380) - 4002820..4003539 (+) 720 WP_003328073.1 AAA family ATPase -
  BATR1942_RS19685 (BATR1942_20385) - 4003609..4005045 (+) 1437 WP_003328074.1 glycoside hydrolase family 1 protein -
  BATR1942_RS19690 (BATR1942_20390) nin/comJ 4005082..4005480 (-) 399 WP_003328075.1 competence protein ComJ Regulator
  BATR1942_RS19695 (BATR1942_20395) nucA/comI 4005499..4005936 (-) 438 WP_003328076.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BATR1942_RS19700 (BATR1942_20400) - 4006158..4007861 (-) 1704 WP_034718159.1 methyl-accepting chemotaxis protein -
  BATR1942_RS19705 (BATR1942_20405) hxlB 4007991..4008548 (-) 558 WP_013390752.1 6-phospho-3-hexuloisomerase -
  BATR1942_RS19710 (BATR1942_20410) hxlA 4008555..4009187 (-) 633 WP_003328079.1 3-hexulose-6-phosphate synthase -
  BATR1942_RS19715 (BATR1942_20415) - 4009406..4009771 (+) 366 WP_003328081.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15947.73 Da        Isoelectric Point: 4.1969

>NTDB_id=38816 BATR1942_RS19695 WP_003328076.1 4005499..4005936(-) (nucA/comI) [Bacillus atrophaeus 1942]
MDLLKSLLLILVIIAAAIAGLVKGDFFSENQKASEDKEYDETISFPSDRYPETAKHIQDAINEGESDVCTIDRDGAEARR
EQSLKDVAVKTGYDRDEWPMAMCKEGGEGASVEYIAPSDNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=38816 BATR1942_RS19695 WP_003328076.1 4005499..4005936(-) (nucA/comI) [Bacillus atrophaeus 1942]
ATGGACTTATTGAAATCATTGCTGCTCATATTGGTGATCATTGCTGCCGCCATTGCCGGGCTGGTTAAAGGCGATTTTTT
CTCAGAAAATCAAAAGGCGTCTGAAGACAAAGAGTATGACGAAACGATTTCTTTCCCATCAGATCGTTATCCTGAAACTG
CGAAACATATTCAAGATGCGATCAATGAAGGTGAGTCAGATGTGTGCACAATTGACAGGGACGGGGCTGAAGCACGACGA
GAACAATCTTTAAAAGATGTGGCAGTCAAAACAGGATACGATCGGGACGAATGGCCGATGGCAATGTGTAAAGAAGGCGG
AGAAGGTGCGTCTGTGGAGTATATCGCCCCGTCGGACAATCGCGGGGCTGGCTCATGGGTCGGTCATCAGCTCACTGATT
ATCCAGATGGAACGAAAGTGTTATTTACCATTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

81.944

99.31

0.814

Multiple sequence alignment