Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BATR1942_RS18335 Genome accession   NC_014639
Coordinates   3728928..3730307 (+) Length   459 a.a.
NCBI ID   WP_013390723.1    Uniprot ID   -
Organism   Bacillus atrophaeus 1942     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3723928..3735307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BATR1942_RS18315 (BATR1942_19025) ctsR 3724282..3724746 (+) 465 WP_003328320.1 transcriptional regulator CtsR -
  BATR1942_RS18320 (BATR1942_19030) - 3724760..3725317 (+) 558 WP_003328319.1 UvrB/UvrC motif-containing protein -
  BATR1942_RS18325 (BATR1942_19035) - 3725317..3726408 (+) 1092 WP_003328318.1 protein arginine kinase -
  BATR1942_RS18330 (BATR1942_19040) clpC 3726405..3728843 (+) 2439 WP_003328317.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  BATR1942_RS18335 (BATR1942_19045) radA 3728928..3730307 (+) 1380 WP_013390723.1 DNA repair protein RadA Machinery gene
  BATR1942_RS18340 (BATR1942_19050) disA 3730311..3731393 (+) 1083 WP_010787418.1 DNA integrity scanning diadenylate cyclase DisA -
  BATR1942_RS18345 (BATR1942_19055) - 3731514..3732614 (+) 1101 WP_003328314.1 PIN/TRAM domain-containing protein -
  BATR1942_RS18350 (BATR1942_19060) ispD 3732628..3733326 (+) 699 WP_003328313.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BATR1942_RS18355 (BATR1942_19065) ispF 3733319..3733795 (+) 477 WP_003328312.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49604.03 Da        Isoelectric Point: 7.9893

>NTDB_id=38813 BATR1942_RS18335 WP_013390723.1 3728928..3730307(+) (radA) [Bacillus atrophaeus 1942]
MAKSKTKFICQSCGYESAKWMGKCPGCGAWNTMTEETVKKTPANRRAAFAHSTQTVKKPSPITSIETSEEPRIKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSTHSVLYISGEESVKQTKLRADRLDINNQTLHVLAETDMEYIS
SAIQEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSIVASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCIIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVVGVANVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=38813 BATR1942_RS18335 WP_013390723.1 3728928..3730307(+) (radA) [Bacillus atrophaeus 1942]
ATGGCTAAATCAAAAACGAAATTTATCTGCCAATCCTGCGGCTATGAATCCGCAAAGTGGATGGGGAAATGTCCGGGCTG
CGGAGCTTGGAACACAATGACGGAAGAAACAGTAAAAAAAACACCGGCTAATCGCAGAGCGGCTTTTGCACACTCTACCC
AAACCGTAAAGAAACCTTCACCTATCACATCAATAGAAACATCTGAAGAACCCCGAATTAAAACACAGCTTGGAGAATTT
AACAGAGTGCTGGGCGGCGGTGTTGTGAAGGGCTCACTTGTCTTAATTGGAGGAGATCCGGGTATTGGTAAGTCAACCTT
GCTGCTTCAGGTATCCGCTCAGTTATCAGACTCCACGCATAGTGTGCTCTACATTTCAGGCGAGGAATCTGTGAAACAAA
CGAAACTCAGAGCAGATCGGCTCGATATTAATAACCAAACGTTACATGTTTTAGCTGAAACCGACATGGAGTATATTTCG
TCTGCTATACAAGAGATGAATCCAGCATTTGTGGTTGTTGACTCCATTCAGACGGTCTATCAAAGCGATATTACATCAGC
TCCGGGCAGTGTGTCGCAAGTCAGGGAGTGTACGGCAGAGCTGATGAGAATTGCTAAGACGAAGGGTATACCGATTTTTA
TCGTAGGACATGTAACAAAAGAAGGTTCAATTGCTGGTCCGAGACTGTTGGAACATATGGTTGATACTGTTCTTTACTTT
GAAGGAGAGCGGCATCATACGTTCCGCATCCTGCGGGCAGTAAAAAACCGTTTCGGCTCTACAAATGAAATGGGCATTTT
CGAAATGCGGGAAGAGGGTCTGACAGAGGTGCTGAATCCTTCTGAAATCTTTCTTGAGGAACGATCAGCCGGAGCGGCAG
GTTCCAGCATAGTAGCATCTATGGAAGGCACCAGACCGATTCTTGTGGAAATACAGGCCCTTATCTCACCGACCAGCTTT
GGGAATCCCCGGCGTATGGCCACGGGAATTGACCATAACAGAGTGTCACTGCTCATGGCAGTGTTAGAAAAAAGAGTCGG
GCTGCTGCTTCAAAATCAAGATGCGTATTTAAAGGTAGCAGGCGGCGTTAAGCTGGATGAACCGGCAATCGATCTCGCTG
TAGCTGTCAGTATTGCATCAAGCTTTAGGGATACACCGCCAAATCCTGCCGACTGCATTATAGGAGAAGTCGGTTTAACA
GGTGAGGTCCGCAGGGTATCCAGAATTGAACAGCGTGTGAAAGAAGCTGCTAAACTTGGATTTAAGCGTATGATCATACC
TGCGGCGAATTTAGATGGATGGACAAAACCAAAAGGGATTGAGGTTGTCGGAGTAGCAAATGTTGCAGAAGCGCTTCGTA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

94.105

99.782

0.939
  radA Streptococcus mitis NCTC 12261

63.355

98.693

0.625
  radA Streptococcus pneumoniae Rx1

63.355

98.693

0.625
  radA Streptococcus pneumoniae D39

63.355

98.693

0.625
  radA Streptococcus pneumoniae R6

63.355

98.693

0.625
  radA Streptococcus pneumoniae TIGR4

63.355

98.693

0.625
  radA Streptococcus mitis SK321

63.135

98.693

0.623

Multiple sequence alignment